[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,384 items for (author: meng & b)

EMDB-80088:
receptor-arrestin
Method: single particle / : Fei X, Zhibin Z

PDB-25gn:
receptor-arrestin
Method: single particle / : Fei X, Zhibin Z

EMDB-56541:
RNA polymerase II bound to RPAP2 and Gdown1 (Map B)
Method: single particle / : Schmitzova J, Zhan Y, Dienemann C

EMDB-56542:
RNA polymerase II bound to RPAP2 and Gdown1
Method: single particle / : Schmitzova J, Zhan Y, Dienemann C

PDB-28jc:
RNA polymerase II bound to RPAP2 and Gdown1
Method: single particle / : Schmitzova J, Zhan Y, Dienemann C

EMDB-75101:
Structure of CRBN/DDB1dB-KAT2A-Compound4 ternary complex
Method: single particle / : Ojeda S, Fischer ES

PDB-10dw:
Structure of CRBN/DDB1dB-KAT2A-Compound4 ternary complex
Method: single particle / : Ojeda S, Fischer ES

EMDB-66217:
Cryo-electron tomogram of vesicular stomatitis virus (VSV) with rabies virus glycoprotein
Method: electron tomography / : Liu L, Zheng Q, Li S, Xia N

EMDB-66218:
Cryo-electron tomogram of vesicular stomatitis virus (VSV) with rabies virus glycoprotein
Method: electron tomography / : Liu L, Zheng Q, Li S, Xia N

EMDB-65779:
ATTRv-V30M type I filament from gastrocnemius muscle biopsy of an individual with a V30M mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65780:
ATTRv-V30M type II filament from gastrocnemius muscle biopsy of an individual with a V30M mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65781:
ATTRv-V30M type III filament from gastrocnemius muscle biopsy of an individual with a V30M mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65782:
ATTRv-F64S type I filament from vitreous body of an individual with a F64S mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65783:
ATTRv-F64S type II filament from vitreous body of an individual with a F64S mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65784:
ATTRv-F64S type III filament from vitreous body of an individual with a F64S mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65785:
ATTRv-F64S type IV filament from vitreous body of an individual with a F64S mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65786:
ATTRv-A97S type I filament from gastrocnemius muscle biopsy of an individual with a A97S mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65787:
ATTRv-A97S type II filament from gastrocnemius muscle biopsy of an individual with a A97S mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65788:
ATTRv-A97S type III filament from gastrocnemius muscle biopsy of an individual with a A97S mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65789:
ATTRv-E61K filament from gastrocnemius muscle biopsy of an individual with a E61K mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65790:
ATTRv-T59K filament from gastrocnemius muscle biopsy of an individual with a T59K mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65791:
ATTRv-G83R type II filament from gastrocnemius muscle biopsy of an individual with a G83R mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65792:
ATTRv-G83R type I filament from gastrocnemius muscle biopsy of an individual with a G83R mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65793:
ATTRv-G83R type II filament from gastrocnemius muscle biopsy of an individual with a G83R mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65794:
ATTRv-V30A type I filament from gastrocnemius muscle biopsy of an individual with a V30A mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65795:
ATTRv-V30A type II filament from gastrocnemius muscle biopsy of an individual with a V30A mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65796:
ATTRv-K35N filament from gastrocnemius muscle biopsy of an individual with a K35N mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-65797:
ATTRv-F33V filament from gastrocnemius muscle biopsy of an individual with a F33V mutation.
Method: helical / : Zheng Y, Liang J, Liu Y, Shi Y

EMDB-57364:
RNA polymerase II elongation complex with the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57365:
Consensus map for RNA Polymerase II elongation complex with the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57390:
RNA polymerase II initially transcribing complex with a 2-nt RNA and the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57391:
Focused refinement map of core Pol II
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57392:
Focused refinement map of nucleosome in RNA polymerase II elongation complex with the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57394:
Focused refinement map of nucleosome of RNA polymerase II initially transcribing complex with a 2-nt RNA and the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57395:
Focused refinement map of cPIC of RNA polymerase II initially transcribing complex with a 2-nt RNA and the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57401:
RNA polymerase II pre-initiation complex bound to ADP-BeF3 in the presence of the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57402:
Focused refinement map of the nucleosome in RNA polymerase II pre-initiation complex bound to ADP-BeF3 in the presence of the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57403:
focused refinement map of core PIC in RNA polymerase II pre-initiation complex bound to ADP-BeF3 in the presence of the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57406:
Focused refinement map of TFIIH in RNA polymerase II pre-initiation complex bound to ADP-BeF3 in the presence of the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57407:
Focused refinement map of XPB in RNA polymerase II pre-initiation complex bound to ADP-BeF3 in the presence of the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

EMDB-57541:
Focused map of the +1 nucleosome (Closed complex)
Method: single particle / : Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

EMDB-57544:
Focused map of core RNA polymerase II pre-initiation complex (PIC) (Closed complex)
Method: single particle / : Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

EMDB-57545:
Focused map of general transcription factor IIH (Closed complex)
Method: single particle / : Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

EMDB-57628:
Focused map of transcription initiation factor IID (TFIID) (Closed complex)
Method: single particle / : Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

EMDB-57691:
TFIID-containing RNA polymerase II pre-initiation complex in the presence of the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

EMDB-57693:
RNA polymerase II initially transcribing complex with a 6-nt RNA and the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

EMDB-57789:
Focused map of the +1 nucleosome (ITC6)
Method: single particle / : Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

EMDB-57793:
Focused map of general transcription factor IIH (ITC6)
Method: single particle / : Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

EMDB-57807:
Focused map of core RNA polymerase II pre-initiation complex (PIC) (ITC6)
Method: single particle / : Zhan Y, Abril-Garrido J, Grabbe F, Seweryn P, Neef U, Dienemann C, Cramer P

PDB-29tk:
RNA polymerase II elongation complex with the +1 nucleosome
Method: single particle / : Zhan Y, Abril-Garrido J, Dienemann C, Cramer P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more