[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 135 items for (author: matsuo & m)

EMDB-17841:
Cryo-EM structure of Sodium proton exchanger NhaA with bound cardiolipin

EMDB-16319:
Structure of the K+/H+ exchanger KefC with GSH

PDB-8by2:
Structure of the K+/H+ exchanger KefC with GSH.

EMDB-16318:
Structure of the K/H exchanger KefC

PDB-8bxg:
Structure of the K/H exchanger KefC.

EMDB-16552:
Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

EMDB-16553:
Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae - focused Refinement 80S

EMDB-16554:
Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae - focused Refinement RQT

EMDB-18634:
Cryo-EM structure of human SLC15A4 dimer in outward open state in MSP1D1 nanodisc

PDB-8qsk:
Cryo-EM structure of human SLC15A4 dimer in outward open state in MSP1D1 nanodisc

EMDB-18637:
Cryo-EM structure of human SLC15A4 monomer in outward open state in PMAL C8

PDB-8qsn:
Cryo-EM structure of human SLC15A4 monomer in outward open state in PMAL C8

EMDB-18636:
Cryo-EM structure of human SLC15A4 monomer in outward open state in LMNG

PDB-8qsm:
Cryo-EM structure of human SLC15A4 monomer in outward open state in LMNG

EMDB-18635:
Cryo-EM structure of human SLC15A4 dimer in outward open state in LMNG

PDB-8qsl:
Cryo-EM structure of human SLC15A4 dimer in outward open state in LMNG

EMDB-34412:
Cryo-EM structure of APOBEC3G-Vif complex

EMDB-35997:
Cryo-EM structure of APOBEC3G-Vif complex

EMDB-35998:
Cryo-EM structure of APOBEC3G-Vif complex

EMDB-35999:
Cryo-EM structure of APOBEC3G-Vif complex

PDB-8h0i:
Cryo-EM structure of APOBEC3G-Vif complex

PDB-8j62:
Cryo-EM structure of APOBEC3G-Vif complex

EMDB-15280:
RQT-bound 80S ribosome from S. cerevisiae (C1, raw consensus map RQT)

EMDB-15228:
RQT-bound 80S ribosome from S. cerevisiae (C1, raw consensus map)

EMDB-16470:
Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex - body 1

EMDB-16471:
in vitro reconstituted yeast 40S ribosome complex with deubiquitinating enzyme Otu2 bound to ubiquitinated eS7 - body 2 (40S head)

EMDB-16525:
Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

EMDB-16533:
Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

EMDB-16541:
Yeast cytoplasmic pre-40S ribosome biogenesis complex with deubiquitinating enzyme Otu2

EMDB-16542:
Local refinement map of Otu2 N-terminal domain bound to yeast 40S ribosome

EMDB-16548:
Local refinement map of Otu2 C-terminal domain bound to ubiquitinated eS7 on yeast 40S ribosome

PDB-8c83:
Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex

PDB-8cah:
Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

PDB-8cas:
Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

PDB-8cbj:
Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

EMDB-15296:
Yeast RQC complex in state G

EMDB-15423:
Yeast RQC complex in state F

EMDB-15424:
Yeast RQC complex in state E

EMDB-15425:
Yeast RQC complex in state H

EMDB-15426:
Yeast RQC complex in state D

EMDB-15427:
Yeast RQC complex in state with the RING domain of Ltn1 in the IN position

EMDB-15428:
Yeast RQC complex in state with the RING domain of Ltn1 in the OUT position

EMDB-15430:
Yeast RQC complex in state A (pre-initiation)

EMDB-15431:
Yeast RQC complex in state B (A-site tRNA only)

EMDB-15432:
Yeast RQC complex in state C

EMDB-15433:
Yeast RQC complex in state I (translocation with A-site and E-site tRNAs)

EMDB-15434:
Yeast RQC complex in state J

PDB-8aaf:
Yeast RQC complex in state G

PDB-8agt:
Yeast RQC complex in state F

PDB-8agu:
Yeast RQC complex in state E

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more