[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 73 items for (author: mann & mk)

EMDB-72108:
Cryo-EM Structure of HIV-1 BG505DS-SOSIP.664 Env Trimer Bound to DFPH-a.01_10R59P_LC Fab
Method: single particle / : Pletnev S, Kwong P, Fischer E

EMDB-49949:
SARS-CoV M protein dimer in complex with JNJ-9676 and FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-49950:
SARS-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-49951:
MERSmut-CoV M protein dimer in complex with FAb B
Method: single particle / : Mann MK, Abeywickrema P

EMDB-46649:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9d8v:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-51901:
SARS-CoV-2 S protein in complex with pT1679 Fab
Method: single particle / : Hansen G, Benecke T, Vollmer B, Gruenewald K, Krey T

PDB-9h6u:
SARS-CoV-2 S protein in complex with pT1679 Fab
Method: single particle / : Hansen G, Benecke T, Vollmer B, Gruenewald K, Krey T

EMDB-42363:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 05_B08 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-42364:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 01_D03 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-42365:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-42366:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 and PGDM1400 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8ulr:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 05_B08 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8uls:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 01_D03 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8ult:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-8ulu:
Cryo-EM structure of the BG505 SOSIPv2 in complex with bNAb 04_A06 and PGDM1400 Fabs
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-43745:
SARS-CoV-2 M protein dimer in complex with JNJ-9676 and Fab-B
Method: single particle / : Yin Y, Van Damme E

EMDB-60383:
Anaerobically isolated active [FeFe]-hydrogenase CbA5H
Method: single particle / : Kawamoto A, Kurisu G

PDB-8zqd:
Anaerobically isolated active [FeFe]-hydrogenase CbA5H
Method: single particle / : Kawamoto A, Kurisu G

EMDB-46478:
Cryo-EM structure of PGDM1400 Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Kanai T, Morano NC, Shapiro L, Kwong PD, Gorman J

EMDB-46532:
Cryo-EM structure of PGT145 R100aS Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
Method: single particle / : Hodges S, Morano NC, Shapiro L, Kwong PD, Gorman J

EMDB-18511:
Mycobacterium smegmatis RNA polymerase in complex with HelD, SigA and RbpA in State II
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

EMDB-18650:
Mycobacterium smegnatis RNAP open promoter complex with SigmaA and RbpA
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

EMDB-18656:
Mycobacterium smegnatis RNA polymerase transcription initiation complex with SigmaA, RbpA, HelD and an upstream-fork promoter fragment
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

EMDB-18851:
Mycobacterium smegnatis RNA polymerase transcription initiation complex with SigmaA, RbpA, HelD N-terminal domain and an upstream-fork promoter fragment; State III conformation
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

EMDB-18873:
Mycobacterium smegnatis RNA polymerase transcription initiation complex with SigmaA, RbpA, HelD N-terminal, CO and PCh loop domain, and an upstream-fork promoter fragment; State III conformation
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

EMDB-18956:
Mycobacterium smegnatis RNA polymerase RP2-like transcription initiation complex with SigmaA, RbpA, HelD N-terminal domain and open promoter DNA
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

EMDB-18959:
Mycobacterium smegnatis RNA polymerase RP2-like transcription initiation complex with SigmaA, RbpA and open promoter DNA
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

PDB-8qn8:
Mycobacterium smegmatis RNA polymerase in complex with HelD, SigA and RbpA in State II
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

PDB-8qti:
Mycobacterium smegnatis RNAP open promoter complex with SigmaA and RbpA
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

PDB-8qu6:
Mycobacterium smegnatis RNA polymerase transcription initiation complex with SigmaA, RbpA, HelD and an upstream-fork promoter fragment
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

PDB-8r2m:
Mycobacterium smegnatis RNA polymerase transcription initiation complex with SigmaA, RbpA, HelD N-terminal domain and an upstream-fork promoter fragment; State III conformation
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

PDB-8r3m:
Mycobacterium smegnatis RNA polymerase transcription initiation complex with SigmaA, RbpA, HelD N-terminal, CO and PCh loop domain, and an upstream-fork promoter fragment; State III conformation
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

PDB-8r6p:
Mycobacterium smegnatis RNA polymerase RP2-like transcription initiation complex with SigmaA, RbpA, HelD N-terminal domain and open promoter DNA
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

PDB-8r6r:
Mycobacterium smegnatis RNA polymerase RP2-like transcription initiation complex with SigmaA, RbpA and open promoter DNA
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

EMDB-18128:
Mycobacterium smegmatis RNA polymerase in complex with HelD, SigA and RbpA in State I
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

PDB-8q3i:
Mycobacterium smegmatis RNA polymerase in complex with HelD, SigA and RbpA in State I
Method: single particle / : Koval T, Krasny L, Dohnalek J, Kouba T

EMDB-17863:
2.7 A cryo-EM structure of in vitro assembled type 1 pilus rod
Method: helical / : Hospenthal M, Zyla D, Glockshuber R, Waksman G

EMDB-17878:
2.5 A cryo-EM structure of the in vitro FimD-catalyzed assembly of type 1 pilus rod
Method: helical / : Zyla D, Hospenthal M, Glockshuber R, Waksman G

EMDB-18698:
Structural insights into the activation mechanism of antimicrobial GBP1: Polymeric assembly of GBP1
Method: single particle / : Weismehl M, Chu X, Kutsch M, Lauterjung P, Herrmann C, Kudryashev M, Daumke O

EMDB-18806:
Structural insights into the activation mechanism of antimicrobial GBP1: Membrane-bound GBP1 oligomer
Method: subtomogram averaging / : Weismehl M, Chu X, Kutsch M, Lauterjung P, Herrmann C, Kudryashev M, Daumke O

PDB-8r1a:
Model of the membrane-bound GBP1 oligomer
Method: subtomogram averaging / : Weismehl M, Chu X, Kutsch M, Lauterjung P, Herrmann C, Kudryashev M, Daumke O

EMDB-16512:
MiniCoV-ADDomer, a SARS-CoV-2 epitope presenting viral like particle
Method: single particle / : Bufton JC, Capin J, Boruku U, Garzoni F, Schaffitzel C, Berger I

EMDB-16522:
Structure of ADDoCoV-ADAH11
Method: single particle / : Yadav KNS, Buzas D, Berger-Schaffitzel C, Berger I

EMDB-25618:
SARS-CoV-2 VFLIP spike boung to 2 Ab12 Fab fragments
Method: single particle / : Olmedillas E, Ollmann-Saphire E

EMDB-25663:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, composite map
Method: single particle / : Byrne PO, McLellan JS

EMDB-25689:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, global map with poorly-resolved RBDs and scFvs
Method: single particle / : Byrne PO, McLellan JS

EMDB-25690:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, local refinement map
Method: single particle / : Byrne PO, McLellan JS

EMDB-25711:
SARS-CoV-2 S (Spike Glycoprotein) D614G with One(1) RBD Up
Method: single particle / : Byrne PO, McLellan JS

PDB-7t3m:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, composite map
Method: single particle / : Byrne PO, McLellan JS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more