[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,681 items for (author: mani & n)

EMDB-52552:
Photosynthetic A8B8 glyceraldehyde-3-phosphate dehydrogenase (minor conformer) from Spinacia oleracea.
Method: single particle / : Marotta R, Fermani S, Sparla F, Trost P, Del Giudice A

PDB-9i06:
Photosynthetic A8B8 glyceraldehyde-3-phosphate dehydrogenase (minor conformer) from Spinacia oleracea.
Method: single particle / : Marotta R, Fermani S, Sparla F

EMDB-52553:
Photosynthetic A8B8 glycerldeyde-3-phosphate dehydrogenase hexadecamer (major conformer) from Spinacia oleracea.
Method: single particle / : Marotta R, Fermani S, Sparla F

PDB-9i07:
Photosynthetic A8B8 glycerldeyde-3-phosphate dehydrogenase hexadecamer (major conformer) from Spinacia oleracea.
Method: single particle / : Marotta R, Fermani S, Sparla F

EMDB-63082:
Cryo-EM structure of ToMMV
Method: helical / : Chatterjee A, Venkatasubramanian A, Mazumdar P, Singh SK, Roy A, Das U, Mandal B, Datta PP

EMDB-52860:
Ku70/80 bound to 147 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52861:
Ku70/80 bound to 153 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52879:
Ku70/80 with Ku70 linker and SAP domain bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52912:
Ku70/80 bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-52958:
DNA-PK bound to a 153 bp H2AX nucleosome model 1
Method: single particle / : Hall C, Chaplin AK

EMDB-53025:
DNA-PK bound to 153 bp H2AX nucleosome model 2
Method: single particle / : Hall C, Chaplin A

EMDB-53026:
Ku80 mediated DNA-PK dimer bound to 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

EMDB-53237:
DNA-PK bound to 153 bp H2AX nucleosome with ATPyS
Method: single particle / : Hall C, Chaplin AK

PDB-9igw:
Ku70/80 bound to 147 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

PDB-9igx:
Ku70/80 bound to 153 bp nucleosome
Method: single particle / : Hall C, Chaplin AK

PDB-9q80:
Ku70/80 with Ku70 linker and SAP domain bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

PDB-9q8x:
Ku70/80 bound to a 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

PDB-9q9f:
DNA-PK bound to a 153 bp H2AX nucleosome model 1
Method: single particle / : Hall C, Chaplin AK

PDB-9qcr:
DNA-PK bound to 153 bp H2AX nucleosome model 2
Method: single particle / : Hall C, Chaplin A

PDB-9qcs:
Ku80 mediated DNA-PK dimer bound to 153 bp H2AX nucleosome
Method: single particle / : Hall C, Chaplin AK

PDB-9qms:
DNA-PK bound to 153 bp H2AX nucleosome with ATPyS
Method: single particle / : Hall C, Chaplin AK

EMDB-74533:
Cryo-EM structure of KCa3.1_II/calmodulin channel in complex with SKA31.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

EMDB-74625:
Cryo-EM structure of KCa3.1_I/calmodulin channel in complex with SKA111.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

EMDB-74626:
Cryo-EM structure of KCa3.1_II/calmodulin channel in complex with SKA111.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

EMDB-74627:
Cryo-EM structure of KCa2.2/calmodulin channel in complex with SKA31.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

PDB-9zpt:
Cryo-EM structure of KCa3.1_II/calmodulin channel in complex with SKA31.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

PDB-9zrk:
Cryo-EM structure of KCa3.1_I/calmodulin channel in complex with SKA111.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

PDB-9zrl:
Cryo-EM structure of KCa3.1_II/calmodulin channel in complex with SKA111.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

PDB-9zrq:
Cryo-EM structure of KCa2.2/calmodulin channel in complex with SKA31.
Method: single particle / : Nam YW, Ramanishka A, Zhang M

EMDB-52336:
Docedameric RuvBL1/RuvBL2
Method: single particle / : Santo PE, Plisson-Chastang C

EMDB-70143:
Cryo-EM structure of human SWELL1-PSA heterocomplex
Method: single particle / : Hagino T, Twomey EC, Qiu Z

PDB-9o5k:
Cryo-EM structure of human SWELL1-PSA heterocomplex
Method: single particle / : Hagino T, Twomey EC, Qiu Z

EMDB-51080:
Group II intron assembly intermediate Domain 1, 2, 3 and 4 "Fully open" state
Method: single particle / : Jadhav SS, Marcia M

PDB-9g56:
Group II intron assembly intermediate Domain 1, 2, 3 and 4 "Fully open" state
Method: single particle / : Jadhav SS, Marcia M

EMDB-73977:
Masked Classification of Prohibitin Complexes Showing the Prohibitin complex without an Additional Matrix-Facing Density (Class 2)
Method: subtomogram averaging / : Medina M, Rahmani H, Chang Y, Barad BA, Grotjahn DA

EMDB-73978:
Masked Classification of Prohibitin Complexes Showing the Prohibitin complex with an Additional Matrix-Facing Density (Class 1)
Method: subtomogram averaging / : Medina M, Rahmani H, Chang Y, Barad BA, Grotjahn DA

EMDB-71792:
Structure of M. tuberculosis type-I FAS in the apo state
Method: single particle / : Mazhab-Jafari MT, Samani EK

EMDB-71793:
Structure of ACP domain conjugated with stearic acid and interacting with MPT domain from M. tuberculosis type-I FAS
Method: single particle / : Mazhab-Jafari MT, Samani EK

EMDB-71794:
Structure of MPT domain of S. cerevisiae type-I FAS, thio-esterified to palmitate
Method: single particle / : Samani EK, Mazhab-Jafari MT

PDB-9pqx:
Structure of M. tuberculosis type-I FAS in the apo state
Method: single particle / : Mazhab-Jafari MT, Samani EK

PDB-9pqy:
Structure of ACP domain conjugated with stearic acid and interacting with MPT domain from M. tuberculosis type-I FAS
Method: single particle / : Mazhab-Jafari MT, Samani EK

PDB-9pqz:
Structure of MPT domain of S. cerevisiae type-I FAS, thio-esterified to palmitate
Method: single particle / : Samani EK, Mazhab-Jafari MT

EMDB-73631:
The Kaggle CryoET Object Identification Challenge: ground truth 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73633:
The Kaggle CryoET Object Identification Challenge: first place 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73634:
The Kaggle CryoET Object Identification Challenge: ground truth apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73635:
The Kaggle CryoET Object Identification Challenge: first place apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73636:
The Kaggle CryoET Object Identification Challenge: ground truth virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73637:
The Kaggle CryoET Object Identification Challenge: first place virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73638:
The Kaggle CryoET Object Identification Challenge: ground truth beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73639:
The Kaggle CryoET Object Identification Challenge: first place beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more