[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 42 items for (author: mangala & prasad & v)

EMDB-63643:
D14.F25.S02 Fab complexed to DENV2-US/BID/V594/2006 virus (5f-3f map)
Method: single particle / : Chatterjee AC, Mangala Prasad V

EMDB-63812:
D14.F25.S02 IgG complexed to DENV2-US/BID/V594/2006 virus
Method: single particle / : Chatterjee AC, Mangala Prasad V

EMDB-63813:
D14.F25.S02 Fab complexed to DENV2-US/BID/V594/2006 virus-3f-2f Fab map
Method: single particle / : Chatterjee AC, Mangala Prasad V

PDB-9m5h:
D14.F25.S02 Fab complexed to DENV2-US/BID/V594/2006 virus (5f-3f map)
Method: single particle / : Chatterjee AC, Mangala Prasad V

PDB-9u37:
D14.F25.S02 IgG complexed to DENV2-US/BID/V594/2006 virus
Method: single particle / : Chatterjee AC, Mangala Prasad V

PDB-9u38:
D14.F25.S02 Fab complexed to DENV2-US/BID/V594/2006 virus-3f-2f Fab map
Method: single particle / : Chatterjee AC, Mangala Prasad V

EMDB-74763:
HIV-1 CH505.N197D Env Ectodomain (Mature VLPs)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74779:
HIV-1 CH505.N197D Env Ectodomain (Immature VLPs)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74786:
HIV-1 Env BG505.SOSIP
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74789:
HIV-1 ADA.CM Env
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74792:
HIV-1 BG505.755* Env
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74797:
HIV-1 ADA.CM.755* (Immature VLPs, Triton X-100 extracted)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74813:
HIV-1 ADA.CM.755* Env (Immature VLPs)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-74814:
HIV-1 ADA.CM.755* Env (Immature VLPs, tilted class)
Method: subtomogram averaging / : Croft JT, Lee KK

EMDB-36641:
BJOX2000.664 trimer in complex with Fab fragment of broadly neutralizing HIV antibody PGT145
Method: single particle / : Chatterjee A, Chen C, Lee K, Mangala Prasad V

EMDB-36649:
CNE55.664 trimer in complex with broadly neutralizing HIV antibody PGT145
Method: single particle / : Chatterjee A, Chen C, Lee K, Mangala Prasad V

PDB-8jtd:
BJOX2000.664 trimer in complex with Fab fragment of broadly neutralizing HIV antibody PGT145
Method: single particle / : Chatterjee A, Chen C, Lee K, Mangala Prasad V

PDB-8jtm:
CNE55.664 trimer in complex with broadly neutralizing HIV antibody PGT145
Method: single particle / : Chatterjee A, Chen C, Lee K, Mangala Prasad V

EMDB-28807:
Cryo-EM structure of Lumazine synthase nanoparticle linked to VP8* antigen
Method: single particle / : Mangala Prasad V, Lee KK

PDB-8f25:
Cryo-EM structure of Lumazine synthase nanoparticle linked to VP8* antigen
Method: single particle / : Mangala Prasad V, Lee KK

EMDB-27248:
Sub-tomogram averaged map of full-length post-fusion CHIKV E1 glycoprotein trimer
Method: subtomogram averaging / : Mangala Prasad V, Lee KK

EMDB-27559:
Cryo-EM map of Chikungunya virus strain s27
Method: single particle / : Mangala Prasad V, Lee KK

PDB-8d87:
Fitted crystal structure of the homotrimer of fusion glycoprotein E1 from SFV into subtomogram averaged CHIKV E1 glycoprotein density
Method: subtomogram averaging / : Mangala Prasad V, Lee KK

EMDB-25178:
Sub-tomogram averaged structure of HIV-1 Envelope protein in native membrane
Method: subtomogram averaging / : Mangala Prasad V, Lee KK

EMDB-25186:
Asymmetric reconstruction of membrane-bound HIV Env from virus-like particles
Method: subtomogram averaging / : Mangala Prasad V, Lee KK

EMDB-25809:
Sub-tomogram averaged map of HIV-Env with Gag layer from immature VLPs
Method: subtomogram averaging / : Mangala Prasad V, Lee KK

PDB-7ska:
Sub-tomogram averaged structure of HIV-1 Envelope protein in native membrane
Method: subtomogram averaging / : Mangala Prasad V, Lee KK

EMDB-24195:
Complex structure of HIV superinfection Fab QA013.2 and BG505.SOSIP.664
Method: single particle / : Mangala Prasad V, Shipley MM, Overbaugh JM, Lee KK

PDB-7n65:
Complex structure of HIV superinfection Fab QA013.2 and BG505.SOSIP.664
Method: single particle / : Mangala Prasad V, Shipley MM, Overbaugh JM, Lee KK

EMDB-9166:
Cryo-EM structure of BG505.SOSIP.664 in complex with BF520.1 antigen binding fragment
Method: single particle / : Williams JA, Lee KK, Overbaugh J

PDB-6mn7:
Cryo-EM structure of BG505.SOSIP.664 in complex with BF520.1 antigen binding fragment
Method: single particle / : Williams JA, Lee KK, Overbaugh J

EMDB-8248:
Subtomogram-averaged surface glycoprotein spike density of rubella virus
Method: subtomogram averaging / : Mangala Prasad V, Klose T

EMDB-8249:
Subtomogram-averaged map of a single rubella virus capsid unit
Method: subtomogram averaging / : Mangala Prasad V, Klose T

EMDB-8250:
Subtomogram-averaged map of a single rubella virus capsid unit
Method: subtomogram averaging / : Mangala Prasad V, Klose T

EMDB-8251:
Subtomogram-averaged map of in vitro assembled rubella virus capsid protein tetramer complex
Method: subtomogram averaging / : Mangala Prasad V, Klose T, Rossmann MG

PDB-5khc:
Structure of rubella virus E1 glycoprotein ectodomain fitted into sub-tomogram averaged surface spike density of rubella virus
Method: subtomogram averaging / : Mangala Prasad V, Klose T, Rossmann MG

PDB-5khe:
Fitted structure of rubella virus capsid protein
Method: subtomogram averaging / : Mangala Prasad V, Klose T, Rossmann MG

PDB-5khf:
Fitted structure of rubella virus capsid protein
Method: subtomogram averaging / : Mangala Prasad V, Klose T, Rossmann MG

EMDB-8508:
Cryo-EM Structure of Immature Zika Virus
Method: single particle / : Mangala Prasad V, Miller AS

PDB-5u4w:
Cryo-EM Structure of Immature Zika Virus
Method: single particle / : Mangala Prasad V, Miller AS, Klose T, Sirohi D, Buda G, Jiang W, Kuhn RJ, Rossmann MG

EMDB-6356:
Electron cryo-microscopy of Chikungunya virus-like particles in complex with neutralizing antibody Fab 5F10
Method: single particle / : Porta JC, Mangala Prasad V, Akahata W, Wang CI, Ng L, Rossmann MG

EMDB-6368:
Electron Cryo-microscopy of Chikungunya virus-like particles in complex with neutralizing antibody Fab 8B10
Method: single particle / : Porta JC, Mangala Prasad V, Wang CI, Akahata W, Ng LFP, Rossmann MG

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more