[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 25,579 items for (author: ma & p)

EMDB-45152:
Cryo-EM structure of the human P2X1 receptor in the apo closed state
Method: single particle / : Oken AC, Lisi NE, Ditter IA, Shi H, Mansoor SE

EMDB-45153:
Cryo-EM structure of the human P2X1 receptor in the ATP-bound desensitized state
Method: single particle / : Oken AC, Lisi NE, Ditter IA, Shi H, Mansoor SE

EMDB-45154:
Cryo-EM structure of the human P2X1 receptor in the NF449-bound inhibited state
Method: single particle / : Oken AC, Lisi NE, Ditter IA, Shi H, Mansoor SE

PDB-9c2a:
Cryo-EM structure of the human P2X1 receptor in the apo closed state
Method: single particle / : Oken AC, Lisi NE, Ditter IA, Shi H, Mansoor SE

PDB-9c2b:
Cryo-EM structure of the human P2X1 receptor in the ATP-bound desensitized state
Method: single particle / : Oken AC, Lisi NE, Ditter IA, Shi H, Mansoor SE

PDB-9c2c:
Cryo-EM structure of the human P2X1 receptor in the NF449-bound inhibited state
Method: single particle / : Oken AC, Lisi NE, Ditter IA, Shi H, Mansoor SE

EMDB-50615:
Structure of a gp140 SpyTag-SpyCatcher mi3 nanoparticle including mi3 density only.
Method: single particle / : Woodward JD, Malebo K, Chapman R

EMDB-50635:
Unmasked HIV-1 envelope trimer gp140 SpyTag SpyCatcher mi3 nanoparticle.
Method: single particle / : Woodward JD, Malebo K, Chapman R

PDB-9fo3:
Structure of a gp140 SpyTag-SpyCatcher mi3 nanoparticle including mi3 density only.
Method: single particle / : Woodward JD, Malebo K, Chapman R

EMDB-41499:
Structure of the kinase lobe of human CDK8 kinase module
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-41502:
Structure of the human CDK8 kinase module
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-41507:
The Middle-IDR of the human transcriptional Mediator complex
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-41509:
The CKM-Hook of the human transcriptional Mediator complex
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-41511:
The Head-IDR of the human transcriptional Mediator complex
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-41512:
The Head-IDRc of the human core Mediator complex
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-41513:
The Middle-IDRc of the human core Mediator complex
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-41565:
Structure of human transcriptional Mediator complex
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-41580:
The IDRc bound human core Mediator complex
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

PDB-8tq2:
Structure of the kinase lobe of human CDK8 kinase module
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

PDB-8tqc:
Structure of the human CDK8 kinase module
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

PDB-8tqw:
Structure of human transcriptional Mediator complex
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

PDB-8trh:
The IDRc bound human core Mediator complex
Method: single particle / : Chen SF, Chao TC, Kim HJ, Tang HC, Khadka S, Li T, Murakami K, Boyer TG, Tsai KL

EMDB-44735:
Structural basis for adhesin secretion by the outer-membrane usher in type 1 pili
Method: single particle / : Bitter RM, Zimmerman M, Hultgren S, Yuan P

PDB-9bog:
Structural basis for adhesin secretion by the outer-membrane usher in type 1 pili
Method: single particle / : Bitter RM, Zimmerman M, Hultgren S, Yuan P

EMDB-19463:
Structure of mouse RyR2 solubilised in detergent in open state in complex with Ca2+, ATP, caffeine and Nb9657.
Method: single particle / : Li C, Efremov RG

EMDB-19464:
Structure of rabbit RyR1 reconstituted into lipid liposomes in open state in complex with Ca2+, ATP, caffeine and Nb9657.
Method: single particle / : Li C, Efremov RG

EMDB-19465:
Structure of RyR1 reconstituted into lipid liposomes in primed state in complex with Ca2+, ATP, caffeine and Nb9657.
Method: single particle / : Li C, Efremov RG

EMDB-19466:
Structure of RyR1 in detergent in close state in complex with FKBP and Nb9657.
Method: single particle / : Li C, Efremov RG

EMDB-19467:
Structure of RyR1 in detergent in open state in complex with Ca2+, ATP, caffeine and Nb9657.
Method: single particle / : Li C, Efremov RG

EMDB-19468:
Structure of RyR1 reconstituted into lipid nanodisc in primed state in complex with Ca2+, ATP, caffeine and Nb9657
Method: single particle / : Li C, Efremov RG

EMDB-19472:
Structure of RyR1 solubilised in detergent in primed state in complex with Ca2+, ATP, caffeine and Nb9657
Method: single particle / : Li C, Efremov RG

PDB-8rrs:
Structure of mouse RyR2 solubilised in detergent in open state in complex with Ca2+, ATP, caffeine and Nb9657.
Method: single particle / : Li C, Efremov RG

PDB-8rrt:
Structure of rabbit RyR1 reconstituted into lipid liposomes in open state in complex with FKBP and Nb9657
Method: single particle / : Li C, Efremov RG

PDB-8rru:
Structure of RyR1 reconstituted into lipid liposomes in primed state in complex with FKBP and Nb9657.
Method: single particle / : Li C, Efremov RG

PDB-8rrv:
Structure of RyR1 in detergent in close state in complex with FKBP and Nb9657.
Method: single particle / : Li C, Efremov RG

PDB-8rrw:
Structure of RyR1 in detergent in open state in complex with FKBP and Nb9657.
Method: single particle / : Li C, Efremov RG

PDB-8rrx:
Structure of RyR1 reconstituted into lipid nanodisc in primed state in complex with Ca2+, ATP, caffeine and Nb9657
Method: single particle / : Li C, Efremov RG

PDB-8rs0:
Structure of RyR1 in detergent in primed state in complex with nanobody and FKBP
Method: single particle / : Li C, Efremov RG

EMDB-50803:
Cryo-EM structure of single-layered nucleoprotein-RNA helical assembly from Marburg virus, trimeric repeat unit
Method: helical / : Zinzula L, Beck F, Camasta M, Bohn S, Liu C, Morado D, Bracher A, Plitzko JM, Baumeister W

EMDB-50804:
Density for a protein trimer unit bound to RNA from a single-layered nucleoprotein-RNA helical assembly from Marburg virus
Method: single particle / : Zinzula L, Beck F, Camasta M, Bohn S, Liu C, Morado D, Bracher A, Plitzko JM, Baumeister W

PDB-9fvd:
Cryo-EM structure of single-layered nucleoprotein-RNA helical assembly from Marburg virus, trimeric repeat unit
Method: helical / : Zinzula L, Beck F, Camasta M, Bohn S, Liu C, Morado D, Bracher A, Plitzko JM, Baumeister W

EMDB-37751:
Cryo-EM structure of T. pseudonana PyShell helical tube
Method: helical / : Kawamoto A, Tohda R, Gerle C, Kurisu G

EMDB-38814:
Complex of FMDV O/18074 and inter-serotype broadly neutralizing antibodies pOA-2
Method: single particle / : Wu S, Lei D

EMDB-38815:
Complex of FMDV A/WH/CHA/09 and inter-serotype broadly neutralizing antibodies pOA-2
Method: single particle / : Wu S, Lei D

EMDB-18575:
Afp1-17 cap
Method: single particle / : Rebrova EM, Taylor NMI

EMDB-18576:
Afp1-16 cap
Method: single particle / : Rebrova EM, Taylor MMI

EMDB-18577:
Afp1-16+ Afp18 delta C8 truncation-Casphi2 cap
Method: single particle / : Rebrova EM, Taylor NMI

EMDB-18579:
Afp1-16 + Afp18 deltaC8-ExoU cap
Method: single particle / : Rebrova EM, Taylor NMI

EMDB-18580:
Anti-feeding prophage with Afp18DC8-ExoU toxin-effector chimera
Method: single particle / : Rebrova EM, Taylor NMI

EMDB-37910:
Structure of the SARS-CoV-2 BA.2.86 spike glycoprotein (closed state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Maenaka K, Hashiguchi T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more