[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 76 items for (author: lopez & aj)

EMDB-53386:
Asgard Archaeal HHoB nucleosome in the closed conformation
Method: single particle / : Ranawat HM, Dodonova SO

EMDB-53387:
Asgard HHoB hypernucleosome in the closed state
Method: single particle / : Ranawat HM, Dodonova SO

EMDB-53388:
Asgard HHoB nucleosome in the open state
Method: single particle / : Ranawat HM, Dodonova SO

EMDB-53389:
Asgard HHoB open hypernucleosome
Method: single particle / : Ranawat HM, Dodonova SO

EMDB-53390:
Asgard HHoB nucleosome map in the open state in 0mM MgCl2
Method: single particle / : Ranawat HM, Dodonova SO

PDB-9qv5:
Asgard Archaeal HHoB nucleosome in the closed conformation
Method: single particle / : Ranawat HM, Dodonova SO

PDB-9qv6:
Asgard HHoB hypernucleosome in the closed state
Method: single particle / : Ranawat HM, Dodonova SO

PDB-9qv7:
Asgard HHoB nucleosome in the open state
Method: single particle / : Ranawat HM, Dodonova SO

EMDB-46479:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 1
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46481:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 2
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46482:
Cryo-EM structure of amyloid fibril extracted from thyroid of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46487:
Cryo-EM structure of amyloid fibril extracted from kidney of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46495:
Cryo-EM structure of amyloid fibril extracted from liver of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-46496:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d21:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 1
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d23:
Cryo-EM structure of amyloid fibril extracted from heart of a variant ATTR T60A amyloidosis patient 2
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d24:
Cryo-EM structure of amyloid fibril extracted from thyroid of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d27:
Cryo-EM structure of amyloid fibril extracted from kidney of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

PDB-9d2g:
Cryo-EM structure of amyloid fibril extracted from liver of a variant ATTR T60A amyloidosis patient 3
Method: helical / : Nguyen AB, Fernandez-Ramirez MC, Saelices L

EMDB-53351:
Cryo-electron tomograms of cryo-FIB milled E. coli cells lacking PBP1b.
Method: electron tomography / : Navarro PP, Bernhardt TG

EMDB-53357:
Cryo-electron tomograms of cryo-FIB milled E. coli lacking LpoB.
Method: electron tomography / : Navarro PP, Bernhardt TG

EMDB-53363:
Cryo-electron tomogram of cryo-FIB milled E. coli cells lacking PBP1a
Method: electron tomography / : Navarro PP, Bernhardt TG

EMDB-43148:
Cryo-EM structure of human monoclonal antibody C7 targeting IT4VAR22 CIDRa1.7 (PfEMP1 A)
Method: single particle / : Raghavan SSR, Ward AB

EMDB-43149:
Cryo-EM structure of human monoclonal antibody C74 targeting IT4VAR22 CIDRa1.7
Method: single particle / : Raghavan SSR, Ward AB

EMDB-43150:
Human monoclonal antibody C7 targeting HB3VAR03 (PfEMP1 A)
Method: single particle / : Raghavan SSR, Ward AB

EMDB-44539:
Cryo-EM structure of human monoclonal antibody C74 targeting PFD1235w (CIDRa1.6) PfEMP1
Method: single particle / : Raghavan SSR, Ward AB

EMDB-17362:
Homotypic interacting B1 fab bound to Chondroitin Sulfate A
Method: single particle / : Raghavan SSR, Dagil R, Wang KT, Salanti A

EMDB-16103:
Human serotonin 5-HT3A receptor (apo, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-16104:
Human serotonin 5-HT3A receptor in complex with vortioxetine (detergent, ECD only, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-16105:
Human serotonin 5-HT3A receptor in complex with vortioxetine (nanodiscs, ECD, active/distorted conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-15689:
Mouse serotonin 5-HT3A receptor in complex with vortioxetine
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-15699:
Human serotonin 5-HT3A receptor (apo, resting conformation)
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8phe:
ACAD9-WT in complex with ECSIT-CTER
Method: single particle / : McGregor L, Acajjaoui S, Desfosses A, Saidi M, Bacia-Verloop M, Schwarz JJ, Juyoux P, Von Velsen J, Bowler MW, McCarthy A, Kandiah E, Gutsche I, Soler-Lopez M

PDB-8phf:
Cryo-EM structure of human ACAD9-S191A
Method: single particle / : McGregor L, Acajjaoui S, Desfosses A, Saidi M, Bacia-Verloop M, Schwarz JJ, Juyoux P, Von Velsen J, Bowler MW, McCarthy A, Kandiah E, Gutsche I, Soler-Lopez M

EMDB-16555:
Mouse serotonin 5-HT3A receptor in complex with PZ-1922
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-16557:
Mouse serotonin 5-HT3A receptor in complex with PZ-1939
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8cc6:
Mouse serotonin 5-HT3A receptor in complex with PZ-1922
Method: single particle / : Lopez-Sanchez U, Nury H

PDB-8cc7:
Mouse serotonin 5-HT3A receptor in complex with PZ-1939
Method: single particle / : Lopez-Sanchez U, Nury H

EMDB-26786:
CPV Affinity Purified Polyclonal Fab A Site Fab
Method: single particle / : Hartmann SR, Hafenstein SL, Charnesky AJ

EMDB-26787:
CPV Affinity Purified Polyclonal Fab B Site Fab
Method: single particle / : Hartmann SR, Hafenstein SL, Charnesky AJ

EMDB-26788:
CPV Total-Fab Polyclonal A Site Fab
Method: single particle / : Hartmann SR, Hafenstein SL, Charnesky AJ

EMDB-26789:
CPV Total-Fab Polyclonal B Site Fab (1 of 2)
Method: single particle / : Hartmann SR, Hafenstein SL, Charnesky AJ

EMDB-26790:
CPV Total-Fab Polyclonal B Site Fab (2 of 2)
Method: single particle / : Hartmann SR, Hafenstein SL, Charnesky AJ

EMDB-33650:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-33651:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-14438:
VAR2 complex with PAM1.4
Method: single particle / : Raghavan SSR, Wang KT

EMDB-14446:
VAR2CSA APO
Method: single particle / : Raghavan SSR, Wang KT

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more