[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,184 items for (author: lin & cc)

EMDB-63452:
Cryo-EM structure of the cytosolic ARMH2-EFCAB9-CATSPERz subcomplex of the mouse CatSpermasome
Method: single particle / : Zhao Q, Lin S, Xu Q, Wu J

PDB-9lwo:
Cryo-EM structure of the cytosolic ARMH2-EFCAB9-CATSPERz subcomplex of the mouse CatSpermasome
Method: single particle / : Zhao Q, Lin S, Xu Q, Wu J

EMDB-70449:
Globular domain of monkeypox virus OPG153 (A28) bound to antibody 02M12
Method: single particle / : Rundlet EJ, Zhou L, McLellan JS

EMDB-70450:
Globular domain of monkeypox virus OPG153 (A28) in complex with antibodies 08E11 and 12I12
Method: single particle / : Zhou L, Rundlet EJ, McLellan JS

PDB-9og1:
Globular domain of monkeypox virus OPG153 (A28) bound to antibody 02M12
Method: single particle / : Rundlet EJ, Zhou L, McLellan JS

PDB-9og2:
Globular domain of monkeypox virus OPG153 (A28) in complex with antibodies 08E11 and 12I12
Method: single particle / : Zhou L, Rundlet EJ, McLellan JS

EMDB-46884:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-46914:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dhw:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dim:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-63944:
Microtubule doublet from wild-type mouse tracheal epithelial cells
Method: subtomogram averaging / : Zhang Y, Ni T, He M, Park HJ, Choi MJ, Cheung HO

EMDB-63946:
microtubule doublet from Kif27-/- mouse tracheal epithelial cells
Method: subtomogram averaging / : Zhang Y, Ni T, He M, Park HJ, Choi MJ, Cheung HO

EMDB-49059:
L9-targeting immunogen bound to three copies of L9 Fab
Method: single particle / : Garfinkle SE, Lin ZJ, Pallesen J

PDB-9n6e:
L9-targeting immunogen bound to three copies of L9 Fab
Method: single particle / : Garfinkle SE, Lin ZJ, Pallesen J

EMDB-52913:
Human chondroitin sulfate polymerase complex CHSY3-CHPF
Method: single particle / : Dutta P, Cordeiro RL, Wild R

EMDB-53011:
Focused refinement map of CHSY3-CHPF complex: N-terminal part
Method: single particle / : Dutta P, Cordeiro RL, Wild R

EMDB-53012:
Focused refinement map of CHSY3-CHPF complex: C-terminal part
Method: single particle / : Dutta P, Cordeiro RL, Wild R

EMDB-53018:
Consensus map of CHSY3-CHPF complex
Method: single particle / : Dutta P, Cordeiro RL, Wild R

PDB-9q8z:
Human chondroitin sulfate polymerase complex CHSY3-CHPF
Method: single particle / : Dutta P, Cordeiro RL, Wild R

EMDB-73631:
The Kaggle CryoET Object Identification Challenge: ground truth 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73633:
The Kaggle CryoET Object Identification Challenge: first place 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73634:
The Kaggle CryoET Object Identification Challenge: ground truth apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73635:
The Kaggle CryoET Object Identification Challenge: first place apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73636:
The Kaggle CryoET Object Identification Challenge: ground truth virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73637:
The Kaggle CryoET Object Identification Challenge: first place virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73638:
The Kaggle CryoET Object Identification Challenge: ground truth beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73639:
The Kaggle CryoET Object Identification Challenge: first place beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73640:
The Kaggle CryoET Object Identification Challenge: ground truth beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73641:
The Kaggle CryoET Object Identification Challenge: first place beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73642:
The Kaggle CryoET Object Identification Challenge: ground truth thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-73643:
The Kaggle CryoET Object Identification Challenge: first place thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-49486:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-9njl:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-48331:
Structure of the Respiratory Syncytial Virus Fusion Protein Bound to Human Antibodies RSV_2245 and RSV_3301
Method: single particle / : Johnson NV, McLellan JS

PDB-9mkn:
Structure of the Respiratory Syncytial Virus Fusion Protein Bound to Human Antibodies RSV_2245 and RSV_3301
Method: single particle / : Johnson NV, McLellan JS

EMDB-47728:
Structure of thioferritin (PfDPSL) with ferrihydrite growth at a single three-fold pore.
Method: single particle / : Gauvin CC, Waghwani HK, Tokmina-Lukaszewska M, Bothner B, Douglas T, Lawrence CM

EMDB-62800:
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with Ace2 constituent map 1
Method: single particle / : Hsu HF, Wu MH, Chang YC, Hsu STD

EMDB-62810:
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with ACE2 constituent map 2
Method: single particle / : Hsu HF, Wu MH, Chang YC, Hsu STD

EMDB-71091:
Cas1-Cas2/3 integrase, heterohexameric assembly
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71097:
Cas1-Cas2/3 integrase bound to foreign dsDNA fragment
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71101:
Cas1-2/3 integration complex, 34 bp foreign DNA with PAM, first transesterification
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71112:
Cas1-2/3 integration complex, 34 bp foreign DNA with PAM, CRISPR leader association
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71114:
Cas1-2/3 integration complex, 32 bp foreign DNA without PAM, CRISPR leader association
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71115:
Cas1-2/3 integration complex, 32 bp foreign DNA without PAM, first transesterification
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71116:
Cas1-2/3 integration complex, 32 bp foreign DNA without PAM, full repeat
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71531:
Angiopoietin-2 in complex with engineered conformationally rigid Fab 5A12.6DS, used for comparison with Fab 5A12.WT
Method: single particle / : Kung J, Johnson MC, Tegunov D, Jao CC, Wu P, Oh A, Lin M, Daria JM, Koth CM, Arthur CP, Rohou A, Sudhamsu J

EMDB-71532:
Angiopoietin-2 in complex with Fab 5A12.WT, used for comparison with Fab 5A12.6DS
Method: single particle / : Kung J, Johnson MC, Tegunov D, Jao CC, Wu P, Oh A, Lin M, Daria JM, Koth CM, Arthur CP, Rohou A, Sudhamsu J

EMDB-54924:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

EMDB-54926:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Class0)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

EMDB-54938:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome (Class1)
Method: single particle / : Gireesh A, Abad MA, Sotelo-Parrilla P, Jeyaprakash AA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more