[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 55 items for (author: lim & bl)

EMDB-65823:
Overall cryo-EM map of GPR15
Method: single particle / : Han S, Wu BL, Zhao Q

EMDB-65824:
Focused cryo-EM map of GPR15 transmembrane domain
Method: single particle / : Han S, Wu BL, Zhao Q

EMDB-71559:
Cryo-EM structure of CCR6 bound by PF-07054894 and OXM2
Method: single particle / : Wasilko DJ, Wu H

PDB-9pee:
Cryo-EM structure of CCR6 bound by PF-07054894 and OXM2
Method: single particle / : Wasilko DJ, Wu H

EMDB-47091:
Taeniopygia guttata R2 retrotransposon (R2Tg) initiating target-primed reverse transcription
Method: single particle / : Wilkinson ME, Edmonds KHK, Zhang F

PDB-9dou:
Taeniopygia guttata R2 retrotransposon (R2Tg) initiating target-primed reverse transcription
Method: single particle / : Wilkinson ME, Edmonds KHK, Zhang F

EMDB-50358:
In vitro-induced genome-releasing intermediate of Rhodobacter microvirus Ebor computed with C5 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50356:
Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Byrom L, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50357:
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50359:
Rhodobacter microvirus Ebor attached to B10 host cell reconstructed by single particle analysis with applied C5 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-50360:
Rhodobacter microvirus Ebor attached to the outer membrane vesicle
Method: subtomogram averaging / : Bardy P, Blaza JN, Jenkins HT, Nicholas TR, Konig HC, Alim NTB, Hart SJ, Turkenburg JP, Fogg PCM, Beatty JT, Antson AA

EMDB-50361:
Rhodobacter microvirus Ebor attached to the host cell reconstructed by subtomogram averaging
Method: subtomogram averaging / : Bardy P, Traore DAK, Blaza JN, Jenkins HT, Nicholas TR, Hart SJ, Turkenburg JP, Fogg PCM, Antson AA

PDB-9ffg:
Empty capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Byrom L, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

PDB-9ffh:
Native capsid of Rhodobacter microvirus Ebor computed with I4 symmetry
Method: single particle / : Bardy P, MacDonald CIW, Jenkins HT, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Fogg PCM, Antson AA

EMDB-39542:
CryoEM structure of fospropofol-bound MRGPRX4-Gq complex
Method: single particle / : Cao C, Fay JF, Roth BL

EMDB-19687:
GroEL with bound GroTAC peptide
Method: single particle / : Wroblewski K, Izert-Nowakowska MA, Goral TK, Klimecka MM, Kmiecik S, Gorna MW

PDB-8s32:
GroEL with bound GroTAC peptide
Method: single particle / : Wroblewski K, Izert-Nowakowska MA, Goral TK, Klimecka MM, Kmiecik S, Gorna MW

EMDB-27271:
CryoEM structure of Western equine encephalitis virus VLP in complex with the avian MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH

EMDB-27272:
CryoEM structure of Western equine encephalitis virus VLP
Method: single particle / : Zimmerman MI, Fremont DH

EMDB-40711:
CryoEM structure of Western equine encephalitis virus VLP in complex with the chimeric Du-D1-Mo-D2 MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID)

PDB-8dan:
CryoEM structure of Western equine encephalitis virus VLP in complex with the avian MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

PDB-8daq:
CryoEM structure of Western equine encephalitis virus VLP
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

PDB-8sqn:
CryoEM structure of Western equine encephalitis virus VLP in complex with the chimeric Du-D1-Mo-D2 MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-36480:
CryoEM structure of isNS1 in complex with Fab56.2 and HDL
Method: single particle / : Chew BLA, Luo D

EMDB-36483:
CryoEM structure of isNS1 in complex with Fab56.2
Method: single particle / : Chew BLA, Luo D

EMDB-28644:
CryoEM structure of Western equine encephalitis virus VLP in complex with the avian MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID)

PDB-8ewf:
CryoEM structure of Western equine encephalitis virus VLP in complex with the avian MXRA8 receptor
Method: single particle / : Zimmerman MI, Fremont DH, Center for Structural Genomics of Infectious Diseases (CSGID), Center for Structural Biology of Infectious Diseases (CSBID)

EMDB-33650:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-33651:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-7y71:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-7y72:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-27256:
Human DNA polymerase alpha/primase elongation complex I bound to primer/template
Method: single particle / : He Q, Baranovskiy A, Lim C, Tahirov T

EMDB-27258:
Human DNA polymerase-alpha/primase elongation complex II bound to primer/template
Method: single particle / : He Q, Baranovskiy A, Lim C, Tahirov T

EMDB-27097:
Human CST-DNA polymerase alpha/primase preinitiation complex bound to 3xTEL template
Method: single particle / : He Q, Lim C

EMDB-27099:
Human CST-DNA polymerase alpha/primase preinitiation complex bound to 3xTEL template - local refined domains and merged
Method: single particle / : He Q, Lim C

EMDB-27104:
Human CST-DNA polymerase alpha/primase preinitiation complex bound to 4xTEL-foldback template
Method: single particle / : He Q, Lin X, Chavez BL, Agrawal S, Lusk BL, Lim C

EMDB-27107:
Human CST-DNA polymerase alpha/primase preinitiation complex bound to 4xTEL-foldback template - PRIM2C advanced PIC
Method: single particle / : He Q, Lin X, Chavez BL, Agrawal S, Lusk BL, Lim C

EMDB-27109:
Human CST-DNA polymerase alpha/primase preinitiation complex bound to 6xTEL DNA template
Method: single particle / : He Q, Lin X, Chavez BL, Agrawal S, Lusk BL, Lim C

EMDB-11804:
Structure of Wild-Type Human Potassium Chloride Transporter KCC3 in NaCl (LMNG/CHS)
Method: single particle / : Chi G, Man H, Pike ACW, Wang D, McKinley G, Mukhopadhyay SMM, MacLean EM, Chalk R, Moreau C, Snee M, Abrusci P, Arrowsmith CH, Bountra C, Edwards AM, Marsden BD, Burgess-Brown NA, Duerr KL

EMDB-11805:
Structure of Wild-type Human Potassium Chloride Transporter KCC3 in NaCl (MSP E3D1)
Method: single particle / : Chi G, Man H, Pike ACW, Wang D, McKinley G, Mukhopadhyay SMM, MacLean EM, Chalk R, Moreau C, Snee M, Abrusci P, Arrowsmith CH, Bountra C, Edwards AM, Marsden BD, Burgess-Brown NA, Duerr KL

EMDB-12311:
Structure of Wild-Type Human Potassium Chloride Transporter KCC3 in NaCl (LMNG/CHS)
Method: single particle / : Chi G, Man H, Pike ACW, Wang D, McKinley G, Mukhopadhyay SMM, MacLean EM, Chalk R, Moreau C, Snee M, Abrusci P, Arrowsmith CH, Bountra C, Edwards AM, Marsden BD, Burgess-Brown NA, Duerr KL

PDB-7ngb:
Structure of Wild-Type Human Potassium Chloride Transporter KCC3 in NaCl (LMNG/CHS)
Method: single particle / : Chi G, Man H, Pike ACW, Wang D, McKinley G, Mukhopadhyay SMM, MacLean EM, Chalk R, Moreau C, Snee M, Abrusci P, Arrowsmith CH, Bountra C, Edwards AM, Marsden BD, Burgess-Brown NA, Duerr KL

EMDB-11799:
Structure of Human Potassium Chloride Transporter KCC3 S45D/T940D/T997D in NaCl (Reference Map)
Method: single particle / : Chi G, Man H

EMDB-11800:
Structure of Human Potassium Chloride Transporter KCC3 S45D/T940D/T997D in NaCl (Subclass)
Method: single particle / : Chi G, Man H

EMDB-11801:
Structure of Human Potassium Chloride Transporter KCC1 in NaCl (Reference Map)
Method: single particle / : Ebenhoch R, Chi G

EMDB-11802:
Structure of Human Potassium Chloride Transporter KCC1 in NaCl (Subclass 1)
Method: single particle / : Ebenhoch R, Chi G

EMDB-11803:
Structure of Human Potassium Chloride Transporter KCC1 in NaCl (Subclass 2)
Method: single particle / : Ebenhoch R, Chi G

PDB-7ain:
Structure of Human Potassium Chloride Transporter KCC3 S45D/T940D/T997D in NaCl (Reference Map)
Method: single particle / : Chi G, Man H, Ebenhoch R, Reggiano G, Pike ACW, Wang D, McKinley G, Mukhopadhyay SMM, MacLean EM, Chalk R, Moreau C, Snee M, Bohstedt T, Singh NK, Abrusci P, Arrowsmith CH, Bountra C, Edwards AM, Marsden BD, Burgess-Brown NA, DiMaio F, Duerr KL, Structural Genomics Consortium (SGC)

PDB-7aio:
Structure of Human Potassium Chloride Transporter KCC3 S45D/T940D/T997D in NaCl (Subclass)
Method: single particle / : Chi G, Man H, Ebenhoch R, Reggiano G, Pike ACW, Wang D, McKinley G, Mukhopadhyay SMM, MacLean EM, Chalk R, Moreau C, Snee M, Bohstedt T, Singh NK, Abrusci P, Arrowsmith CH, Bountra C, Edwards AM, Marsden BD, Burgess-Brown NA, DiMaio F, Duerr KL, Structural Genomics Consortium (SGC)

PDB-7aip:
Structure of Human Potassium Chloride Transporter KCC1 in NaCl (Reference Map)
Method: single particle / : Ebenhoch R, Chi G, Man H, Wang D, McKinley G, Mukhopadhyay SMM, MacLean EM, Chalk R, Moreau C, Snee M, Bohstedt T, Liko I, Tehan BG, Almeida FG, Elkins J, Singh NK, Abrusci P, Arrowsmith CH, Tang H, Robinson CV, Bountra C, Edwards AM, Marsden BD, Burgess-Brown NA, Duerr KL, Structural Genomics Consortium (SGC)

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more