[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 7,997 items for (author: li & ry)

EMDB-52409:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor ORG25543
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-52410:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor RPI-GLYT2-82
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides SA, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-52411:
Inward-open structure of human glycine transporter 2 in substrate-free state
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-53509:
Inward-occluded structure of human glycine transporter 2 bound to substrate glycine
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9hue:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor ORG25543
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9huf:
Outward-open structure of human glycine transporter 2 bound to allosteric inhibitor RPI-GLYT2-82
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9hug:
Inward-open structure of human glycine transporter 2 in substrate-free state
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

PDB-9r1h:
Inward-occluded structure of human glycine transporter 2 bound to substrate glycine
Method: single particle / : Cantwell Chater RP, Peiser-Oliver J, Pati TK, Quinn AS, Lotsaris I, Frangos ZJ, Anderson KE, Tischer AE, Williams-Noonan BJ, Aubrey KR, O Mara ML, Michaelides M, Mohammadi SA, Cioffi CL, Vandenberg RJ, Shahsavar A

EMDB-72630:
Cryo-EM map of Mycobacterium tuberculosis pyruvate dehydrogenase complex E2p core subunit DlaT in a hexamer state
Method: single particle / : Hsu HC, Li H

EMDB-72639:
Cryo-EM map of Mycobacterium tuberculosis pyruvate dehydrogenase complex E2p core subunit DlaT in a two-hexamer state
Method: single particle / : Hsu HC, Li H

EMDB-72666:
Cryo-EM map of Mycobacterium tuberculosis pyruvate dehydrogenase complex E2p core subunit DlaT bound to coenzyme A in a hexamer state
Method: single particle / : Hsu HC, Li H

EMDB-72667:
Cryo-EM map of Corynebacterium glutamicum pyruvate dehydrogenase complex E2p core in a trimer state
Method: single particle / : Hsu HC, Li H

PDB-9y6t:
Structure of Mycobacterium tuberculosis pyruvate dehydrogenase complex E2p core subunit DlaT in a hexamer state
Method: single particle / : Hsu HC, Li H

PDB-9y72:
Structure of Mycobacterium tuberculosis pyruvate dehydrogenase complex E2p core subunit DlaT in a two-hexamer state
Method: single particle / : Hsu HC, Li H

PDB-9y7v:
Structure of Mycobacterium tuberculosis pyruvate dehydrogenase complex E2p core subunit DlaT bound to coenzyme A in a hexamer state
Method: single particle / : Hsu HC, Li H

EMDB-75514:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

PDB-10xu:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

EMDB-53787:
Paranemic crossover triangle (PXT) with 2'-Fluoro-modified pyrimidines (FY RNA)
Method: single particle / : Kristoffersen EL, Andersen ES, Zwergius NH

EMDB-53795:
5-Helix Tile - Twist Corrected (5HT-TC) with 2'-Fluoro-modified pyrimidines (FY RNA)
Method: single particle / : Kristoffersen EL, Andersen ES, Zwergius NH

EMDB-53803:
6-Helix Bundle - with a Clasp (6HB-C)-monomer with 2'-Fluoro-modified pyrimidines (FY RNA)
Method: single particle / : Kristoffersen EL, Andersen ES, Zwergius NH

EMDB-72725:
Cryo-EM structure of ternary complex BCL6-CRBN-DDB1 with BMS-986458 (local refined), a potent and selective BCL6 ligand directed degrader (LDD)
Method: single particle / : Zhu J, Fang W, Pagarigan B

EMDB-54897:
Structure of the honeybee GABAA RDL receptor with GABA and Abamectin
Method: single particle / : Laboure T, Nury H

PDB-9she:
Structure of the honeybee GABAA RDL receptor with GABA and Abamectin
Method: single particle / : Laboure T, Nury H

EMDB-71415:
Yeast Respiratory SuperComplex - deltaQCR6
Method: single particle / : Baker ML

EMDB-71416:
Yeast Respiratory SuperComplex - non uniform refinement
Method: single particle / : Baker ML

EMDB-53230:
NMT1-NAC bound human RNC with full length ARF1 - State 1
Method: single particle / : Denk T, Berninghausen O, Beckmann R

EMDB-53231:
NMT1-NAC bound human RNC with full length ARF1 - State 2
Method: single particle / : Denk T, Berninghausen O, Beckmann R

EMDB-53232:
NMT1-NAC bound human RNC with full length ARF1 - alternative State
Method: single particle / : Denk T, Berninghausen O, Beckmann R

EMDB-54528:
NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 1
Method: single particle / : Denk T, Berninghausen O, Beckmann R

EMDB-54529:
NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 2
Method: single particle / : Denk T, Berninghausen O, Beckmann R

EMDB-54530:
NAC bound human RNC with 58 amino acid ARF1-linker
Method: single particle / : Denk T, Berninghausen O, Beckmann R

PDB-9qlo:
NMT1-NAC bound human RNC with full length ARF1 - State 1
Method: single particle / : Denk T, Berninghausen O, Beckmann R

PDB-9qlp:
NMT1-NAC bound human RNC with full length ARF1 - State 2
Method: single particle / : Denk T, Berninghausen O, Beckmann R

PDB-9qlq:
NMT1-NAC bound human RNC with full length ARF1 - alternative State
Method: single particle / : Denk T, Berninghausen O, Beckmann R

PDB-9s3b:
NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 1
Method: single particle / : Denk T, Berninghausen O, Beckmann R

PDB-9s3c:
NMT1-NAC bound human RNC with 58 amino acid ARF1-linker - State 2
Method: single particle / : Denk T, Berninghausen O, Beckmann R

PDB-9s3d:
NAC bound human RNC with 58 amino acid ARF1-linker
Method: single particle / : Denk T, Berninghausen O, Beckmann R

EMDB-53353:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

PDB-9qtj:
Structure of Oceanobacillus iheyensis group II intron domains D1-D6
Method: single particle / : Jadhav SS, Nigro M, Marcia M

EMDB-54906:
Structure of the honeybee GABAA RDL receptor with GABA
Method: single particle / : Laboure T, Nury H

EMDB-54929:
Structure of the honeybee GABAA RDL receptor apo state
Method: single particle / : Laboure T, Nury H

EMDB-54930:
Structure of the honeybee GABAA RDL receptor with Chrodrimanin B
Method: single particle / : Laboure T, Nury H

PDB-9sho:
Structure of the honeybee GABAA RDL receptor with GABA
Method: single particle / : Laboure T, Nury H

PDB-9sio:
Structure of the honeybee GABAA RDL receptor apo state
Method: single particle / : Laboure T, Nury H

PDB-9siq:
Structure of the honeybee GABAA RDL receptor with Chrodrimanin B
Method: single particle / : Laboure T, Nury H

EMDB-66358:
Cryo-EM structure of TMEM63A-digitonin-cholesterol
Method: single particle / : Lin Y, Zhou Z, Han Y, Cheng D, Wang H, Ju L, Zhang Y, Cox DC, Corry B

PDB-9wxv:
Cryo-EM structure of TMEM63A-digitonin-cholesterol
Method: single particle / : Lin Y, Zhou Z, Han Y, Cheng D, Wang H, Ju L, Zhang Y, Cox DC, Corry B

EMDB-49520:
Focused refinement of the prefusion F glycoprotein ectodomain of Nipah virus in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-52581:
NMT1-NAC bound human RNC with 10 amino acid ARF1-linker
Method: single particle / : Denk T, Berninghausen O, Beckmann R

EMDB-52582:
NMT1-NAC bound human ribosome (combined translational states)
Method: single particle / : Denk T, Berninghausen O, Beckmann R

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more