[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 4,908 items for (author: lee & k)

EMDB-66444:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) in C1 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66445:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkB in C1 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66446:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkA in C1 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66447:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66448:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkB in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-66449:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkA in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

PDB-9x0w:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

PDB-9x0x:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkB in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

PDB-9x0y:
Pseudomonas aeruginosa (PAO1) Outer membrane PilQ (Secretin) with SlkA in C14 symmetry
Method: single particle / : Kwon O, Lee Y, Ryu B, Yoo Y, Chung J, Cho H

EMDB-75389:
E.coli 50S ribosomal subunit bound to compound 48a
Method: single particle / : Raskar T, Lee I

PDB-10qm:
E.coli 50S ribosomal subunit bound to compound 48a
Method: single particle / : Raskar T, Lee I

EMDB-71877:
Insulin receptor bound to S961
Method: single particle / : Vogel A, Blakely A, Hill CP

PDB-9puv:
Insulin receptor bound to S961
Method: single particle / : Vogel A, Blakely A, Hill CP

EMDB-55593:
Chlorophyll f-containing dimeric far-red Photosystem II from Chroococcidiopsis thermalis PCC 7203
Method: single particle / : Leong HF, Consoli G, Murray JW, Fantuzzi A, Rutherford AW

EMDB-55594:
Chlorophyll f-containing monomeric far-red Photosystem II from Calothrix sp. NIES-3974
Method: single particle / : Leong HF, Consoli G, Murray JW, Fantuzzi A, Rutherford AW

EMDB-73168:
Structure of the T6SS effector protein PdpC
Method: single particle / : Liu X, Zhou ZH

EMDB-70938:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5' leader (sub-conformation 1 of tRNA anticodon arm tilted)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70939:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5' leader (sub-conformation 2 of tRNA anticodon arm tilted)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70942:
Structure of Geobacillus stearothermophilus RNase P holoenzyme in 5 mM Mg2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70943:
Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with precursor tRNA in 5 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70944:
Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with precursor tRNA in 1 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70945:
Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with mature tRNA in 5 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70946:
Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with the precursor tRNA with non-complementary 5' leader
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70947:
Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with the precursor tRNA with loop-back 5' leader (sub-conformation 1 of tRNA anticodon arm tilted)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70948:
Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with the precursor tRNA with loop-back 5' leader (sub-conformation 2 of tRNA anticodon arm tilted)
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70787:
Designed one-component T=3 quasisymmetric protein nanocage
Method: single particle / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70792:
Designed one-component T=3 quasisymmetric protein nanocage pentamer sub-particle region
Method: single particle / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70797:
Designed one-component T=13 quasisymmetric protein nanocage pentamer sub-particle region
Method: subtomogram averaging / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70798:
Designed one-component T=13 quasisymmetric protein nanocage hexamer sub-particle region
Method: subtomogram averaging / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-76684:
Pneumococcal choline binding CbpE surface protein bounds to 5992-2 Fab
Method: single particle / : McCormick A, Ghazi Esfahani B, Vidal J, Lee FE, Tompkins M, McCaffrey K, Mousa J

EMDB-76685:
Pneumococcal choline binding CbpE surface protein bounds to multiple 5992-2 Fabs
Method: single particle / : McCormick A, Ghazi Esfahani B, Vida J, Lee FE, Tompkins M, McCaffrey K, Mousa J

PDB-12qj:
Pneumococcal choline binding CbpE surface protein bounds to 5992-2 Fab
Method: single particle / : McCormick A, Ghazi Esfahani B, Vidal J, Lee FE, Tompkins M, McCaffrey K, Mousa J

EMDB-70934:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA in 10 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-75437:
Importin-9 bound to ETS homologous factor (EHF)
Method: single particle / : Bernardes NE, Lankford K, McConville M, Chook YM, Liszczak G

PDB-10sm:
Importin-9 bound to ETS homologous factor (EHF)
Method: single particle / : Bernardes NE, Lankford K, McConville M, Chook YM, Liszczak G

EMDB-75944:
Human transferrin receptor ectodomain
Method: single particle / : Lee H, Ros C, Hafenstein S

EMDB-75980:
Complex of B19V VP1u RBD and human transferrin receptor ectodomain
Method: single particle / : Lee H, Ros C, Hafenstein S

EMDB-70605:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

EMDB-70685:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

PDB-9om3:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

PDB-9op9:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

EMDB-70888:
Structure of Geobacillus stearothermophilus RNase P ribozyme
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70891:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 1
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70892:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 2
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70893:
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 3
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70896:
Structure of Geobacillus stearothermophilus RNase P ribozyme in 5 mM Mg2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70897:
Structure of Geobacillus stearothermophilus RNase P ribozyme in 10 mM Mg2+
Method: single particle / : Lee YT, Skeparnias I, Stagno JR, Wang YX

EMDB-70933:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA in 5 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70935:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 5 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

EMDB-70936:
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 10 mM Ca2+
Method: single particle / : Lee YT, Stagno JR, Wang YX

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more