[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 230 items for (author: le & wd)

EMDB-71405:
Activated GluA4 homotetrameric AMPAR.
Method: single particle / : Hale WD, Huganir RL, Twomey EC

EMDB-71406:
Active substate 1 of the GluA4 homotetramer.
Method: single particle / : Hale WD, Huganir RL, Twomey EC

EMDB-71407:
Active substate 2 of the GluA4 homotetramer.
Method: single particle / : Hale WD, Huganir RL, Twomey EC

EMDB-71408:
Active substate 3 of the GluA4 homotetramer.
Method: single particle / : Hale WD, Huganir RL, Twomey EC

EMDB-71409:
Active substate 4 of the GluA4 homotetramer.
Method: single particle / : Hale WD, Huganir RL, Twomey EC

EMDB-71410:
Active substate 5 of the GluA4 homotetramer.
Method: single particle / : Hale WD, Huganir RL, Twomey EC

EMDB-70338:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

EMDB-71715:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71727:
West Nile virus E protein
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-71728:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9od2:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody SMZAb2 Fab
Method: single particle / : Galkin A, Pozharski E

PDB-9pl9:
Cryo-EM structure of modified JEV virus E protein dimer
Method: single particle / : Galkin A, Pozharski E, Li Y

PDB-9pm6:
Cryo-EM structure of modified Zika virus E protein dimer complexed with a neutralizing antibody OZ-D4 Fab
Method: single particle / : Galkin A, Pozharski E, Li Y

EMDB-70663:
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70666:
Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9oog:
Cryo-EM structure of vaccine-elicited antibody T3_NB_G05 in complex with HIV Env trimer Q23-APEX-GT1.N187S
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9oom:
Cryo-EM structure of vaccine-elicited antibody T6_P_H03 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70664:
Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

PDB-9ook:
Cryo-EM structure of vaccine-elicited antibody T3_QB_G12 in complex with HIV Env trimer Q23-APEX-GT1
Method: single particle / : Roark RS, Shapiro LS, Kwong PD

EMDB-70613:
Cryo-EM structure of rhesus antibody V033-Int1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9omg:
Cryo-EM structure of rhesus antibody V033-a.I1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-44747:
A broadly-neutralizing antibody against Ebolavirus glycoprotein that can potentiate the breadth and neutralization potency of other anti-glycoprotein antibodies
Method: single particle / : Donnellan FR, Rayaprolu V, Rijal P, O'Dowd V, Parvate A, Callaway H, Hariharan C, Parekh D, Hui S, Shaffer K, Hastie K, Shimanski L, Muller-Krauter H, Stecker T, Balaram A, Halfmann P, Saphire EO, Lightwood DJ, Townsend AR, Draper SJ

PDB-9bop:
A broadly-neutralizing antibody against Ebolavirus glycoprotein that can potentiate the breadth and neutralization potency of other anti-glycoprotein antibodies
Method: single particle / : Donnellan FR, Rayaprolu V, Rijal P, O'Dowd V, Parvate A, Callaway H, Hariharan C, Parekh D, Hui S, Shaffer K, Hastie K, Shimanski L, Muller-Krauter H, Stecker T, Balaram A, Halfmann P, Saphire EO, Lightwood DJ, Townsend AR, Draper SJ

EMDB-61605:
50S Ribosomal Subunit precursor state III
Method: single particle / : Sengupta S, Mukherjee R, Pilsl M, Bagale S, Adhikary AD, Borkar A, Pradeepkumar PI, Engel C, Chowdhury A, Kaushal PS, Anand R

EMDB-61613:
50S subunit precursor state I
Method: single particle / : Sengupta S, Mukherjee R, Pilsl M, Bagale S, Adhikary AD, Borkar A, Pradeepkumar PI, Engel C, Chowdhury A, Kaushal PS, Anand R

EMDB-61625:
50S precursor - Erm complex (C-II)
Method: single particle / : Sengupta S, Mukherjee R, Pilsl M, Bagale S, Adhikary AD, Borkar A, Pradeepkumar PI, Engel C, Chowdhury A, Kaushal PS, Anand R

EMDB-61781:
50S precursor - Erm complex (C-I)
Method: single particle / : Sengupta S, Mukherjee R, Pilsl M, Bagale S, Adhikary AD, Borkar A, Pradeepkumar PI, Engel C, Chowdhury A, Kaushal PS, Anand R

PDB-9jmk:
50S Ribosomal Subunit precursor state III
Method: single particle / : Sengupta S, Mukherjee R, Pilsl M, Bagale S, Adhikary AD, Borkar A, Pradeepkumar PI, Engel C, Chowdhury A, Kaushal PS, Anand R

PDB-9jns:
50S precursor - Erm complex (C-II)
Method: single particle / : Sengupta S, Mukherjee R, Pilsl M, Bagale S, Adhikary AD, Borkar A, Pradeepkumar PI, Engel C, Chowdhury A, Kaushal PS, Anand R

PDB-9jsr:
50S precursor - Erm complex (C-I)
Method: single particle / : Sengupta S, Mukherjee R, Pilsl M, Bagale S, Adhikary AD, Borkar A, Pradeepkumar PI, Engel C, Chowdhury A, Kaushal PS, Anand R

EMDB-70451:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex closed conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

EMDB-70453:
SARS-COV-2-6P-MUT7 S PROTEIN-DY-III-281 complex 1 RBD up conformation
Method: single particle / : Chandravanshi M, Niu L, Tolbert WD, Pazgier M

EMDB-70454:
Apo SARS-COV-2-6P-MUT7 S PROTEIN closed conformation
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

EMDB-70455:
APO SARS-COV-2-6P-MUT7 S PROTEIN 1 RBD UP CONFORMATION
Method: single particle / : Niu L, Chandravanshi M, Tolbert WD, Pazgier M

EMDB-63642:
Structure of SPIN90 dimer-Arp2/3 complex-nucleated actin filament (singlet complex)
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63658:
Structure of SPIN90 dimer-Arp2/3 complexes-nucleated actin filaments (Doublet Complex)
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63880:
Focused Arp2/3 complex map of SPIN90 dimer-Arp2/3 complex-filament singlet complex structure
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63883:
Focused SPIN90-dimer map of SPIN90 dimer-Arp2/3 complex-filament singlet complex structure
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63886:
Focused actin filament map of SPIN90 dimer-Arp2/3 complex-filament singlet complex structure
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63887:
Arp2/3 complex from bottom half of SPIN90 dimer-Arp2/3 complex-actin filament Doublet complex
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63888:
Arp2/3 complex from the top half of SPIN90 dimer-Arp2/3 complex-actin filament Doublet complex
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63889:
Focused SPIN90-dimer of SPIN90 dimer-Arp2/3 complex-actin filament Doublet complex
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63890:
Focused filament from second half of SPIN90 dimer-Arp2/3 complex-actin filament Doublet complex
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-63891:
Focused filament from one half of SPIN90 dimer-Arp2/3 complex-actin filament Doublet complex
Method: single particle / : Francis J, Pathri AK, Chowdhury S

PDB-9m5e:
Structure of SPIN90 dimer-Arp2/3 complex-nucleated actin filament (singlet complex)
Method: single particle / : Francis J, Pathri AK, Chowdhury S

PDB-9m64:
Structure of SPIN90 dimer-Arp2/3 complexes-nucleated actin filaments (Doublet Complex)
Method: single particle / : Francis J, Pathri AK, Chowdhury S

EMDB-70158:
In-situ structure of the injectisome of Shigella flexneri with needle from mxiG linker mutant with three EAAAR motifs
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-70160:
In-situ structure of the injectisome of Shigella flexneri without needle from mxiG linker mutant with three EAAAR motifs
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-70161:
In-situ structure of the injectisome of Shigella flexneri without needle from mxiG linker deletion mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

EMDB-70162:
In-situ structure of the injectisome of Shigella flexneri with needle from mxiG linker deletion mutant
Method: subtomogram averaging / : Tachiyama S, Liu J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more