[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 77 items for (author: koziej & l)

EMDB-55898:
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with bound plastocyanin
Method: single particle / : Pietras R, Sarewicz M, Szwalec M, Indyka P, Rawski M, Pintscher S, Mielecki B, Jaciuk M, Koziej L, Glatt S, Osyczka A

PDB-9tgg:
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with bound plastocyanin
Method: single particle / : Pietras R, Sarewicz M, Szwalec M, Indyka P, Rawski M, Pintscher S, Mielecki B, Jaciuk M, Koziej L, Glatt S, Osyczka A

EMDB-19945:
Yeast 80S ribosome (ncs2 elp6 -/-) PRE-translocation-hybrid P/E A/A* (PRE-H2) dataset 1/2
Method: single particle / : Koziej L, Glatt S

EMDB-19946:
Yeast 80S ribosome (ncs2 elp6 -/-) PRE-translocation-hybrid P/E A/A* (PRE-H2) dataset 2/2
Method: single particle / : Koziej L, Glatt S

EMDB-19947:
Yeast 80S ribosome (wild type) PRE-translocation-hybrid P/E A/A* (PRE-H2) dataset 1/2
Method: single particle / : Koziej L, Glatt S

EMDB-19948:
Yeast 80S ribosome (wild type) PRE-translocation-hybrid P/E A/A* (PRE-H2) dataset 2/2
Method: single particle / : Koziej L, Glatt S

EMDB-19949:
Yeast 80S ribosome PRE-translocation-hybrid P/E A/A (PRE-H1)
Method: single particle / : Koziej L, Glatt S

EMDB-19950:
Yeast 80S ribosome posttranslocation non-rotated P/P (POST2-NR)
Method: single particle / : Koziej L, Glatt S

EMDB-19951:
Yeast 80S ribosome PRE-translocation non-rotated P/P A/A (PRE-NR)
Method: single particle / : Koziej L, Glatt S

EMDB-19952:
Yeast 80S ribosome posttranslocation non-rotated E/E P/P (POST1-NR)
Method: single particle / : Koziej L, Glatt S

EMDB-19953:
Yeast 80S ribosome splitting complex with P/P tRNA, eRF1, and ABCE1 (SC)
Method: single particle / : Koziej L, Glatt S

EMDB-52308:
Mouse QTRT1/2 in complex with mouse tRNA-Tyr
Method: single particle / : Kaczmarczyk I, Koziej L, Glatt S

EMDB-52309:
Mouse QTRT1/2 in complex with mouse pre-tRNA-Tyr-1-4
Method: single particle / : Kaczmarczyk I, Koziej L, Glatt S

PDB-9hn7:
Mouse QTRT1/2 in complex with mouse tRNA-Tyr
Method: single particle / : Kaczmarczyk I, Koziej L, Glatt S

PDB-9hn9:
Mouse QTRT1/2 in complex with mouse pre-tRNA-Tyr-1-4
Method: single particle / : Kaczmarczyk I, Koziej L, Glatt S

EMDB-50108:
Medium-resolution cryo-EM structure of the Danio rerio tRNA ligase complex
Method: single particle / : Chamera S, Zajko W, Czarnocki-Cieciura M, Jaciuk M, Koziej L, Nowak J, Wycisk K, Sroka M, Chramec-Glabik A, Smietanski M, Golebiowski F, Warminski M, Jemielity J, Glatt S, Nowotny M

EMDB-52744:
Cryo-EM structure of the Danio rerio tRNA ligase complex
Method: single particle / : Chamera S, Zajko W, Czarnocki-Cieciura M, Jaciuk M, Koziej L, Nowak J, Wycisk K, Sroka M, Chramiec-Glabik A, Smietanski M, Golebiowski F, Warminski M, Jemielity J, Glatt S, Nowotny M

PDB-9i8v:
Cryo-EM structure of the Danio rerio tRNA ligase complex
Method: single particle / : Chamera S, Zajko W, Czarnocki-Cieciura M, Jaciuk M, Koziej L, Nowak J, Wycisk K, Sroka M, Chramiec-Glabik A, Smietanski M, Golebiowski F, Warminski M, Jemielity J, Glatt S, Nowotny M

EMDB-50999:
Circularly permuted lumazine synthase twisted tube with no gap between between double strands
Method: helical / : Koziej L, Azuma Y

EMDB-51000:
Circularly permuted lumazine synthase twisted tube with 18 Angstrom gap between double strands
Method: helical / : Koziej L, Azuma Y

EMDB-51001:
Circularly permuted lumazine synthase twisted tube with 28 Angstrom gap between double strands
Method: helical / : Koziej L, Azuma Y

EMDB-51003:
Circularly permuted lumazine synthase triple-stranded straight tube
Method: helical / : Koziej L, Azuma Y

EMDB-51004:
Circularly permuted lumazine synthase 36-pentamer spherical cage
Method: single particle / : Koziej L, Azuma Y

EMDB-51005:
Circularly permuted lumazine synthase 24-pentamer spherical cage
Method: single particle / : Koziej L, Azuma Y

EMDB-51006:
Circularly permuted lumazine synthase 12-pentamer spherical cage
Method: single particle / : Koziej L, Azuma Y

PDB-9g3h:
Circularly permuted lumazine synthase twisted tube with no gap between between double strands
Method: helical / : Koziej L, Azuma Y

PDB-9g3i:
Circularly permuted lumazine synthase twisted tube with 18 Angstrom gap between double strands
Method: helical / : Koziej L, Azuma Y

PDB-9g3j:
Circularly permuted lumazine synthase twisted tube with 28 Angstrom gap between double strands
Method: helical / : Koziej L, Azuma Y

PDB-9g3m:
Circularly permuted lumazine synthase triple-stranded straight tube
Method: helical / : Koziej L, Azuma Y

PDB-9g3n:
Circularly permuted lumazine synthase 36-pentamer spherical cage
Method: single particle / : Koziej L, Azuma Y

PDB-9g3o:
Circularly permuted lumazine synthase 24-pentamer spherical cage
Method: single particle / : Koziej L, Azuma Y

PDB-9g3p:
Circularly permuted lumazine synthase 12-pentamer spherical cage
Method: single particle / : Koziej L, Azuma Y

EMDB-19938:
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with water molecules at 1.94 A resolution
Method: single particle / : Pietras R, Pintscher S, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

EMDB-19939:
Cryo-EM structure of Spinacia oleracea cytochrome b6f with decylplastoquinone bound at plastoquionol reduction site
Method: single particle / : Pietras R, Pintscher S, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

EMDB-19940:
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with inhibitor DBMIB bound at plastoquinol oxidation site
Method: single particle / : Pietras R, Pintscher S, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

PDB-9es7:
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with water molecules at 1.94 A resolution
Method: single particle / : Pietras R, Pintscher S, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

PDB-9es8:
Cryo-EM structure of Spinacia oleracea cytochrome b6f with decylplastoquinone bound at plastoquionol reduction site
Method: single particle / : Pietras R, Pintscher S, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

PDB-9es9:
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with inhibitor DBMIB bound at plastoquinol oxidation site
Method: single particle / : Pietras R, Pintscher S, Mielecki B, Szwalec M, Wojcik-Augustyn A, Indyka P, Rawski M, Koziej L, Jaciuk M, Wazny G, Glatt S, Osyczka A

EMDB-16917:
Human apo pseudouridine synthase 3 (PUS3)
Method: single particle / : Lin TY, Glatt S, Koziej L

EMDB-16926:
Human pseudouridine synthase 3 and tRNA-Gln
Method: single particle / : Lin TY, Glatt S

EMDB-19830:
Human pseudouridine synthase 3 (PUS3 R116A mutant) and two tRNA-Gln
Method: single particle / : Lin TY, Jezowski J, Glatt S

EMDB-19831:
Human pseudouridine synthase 3 (PUS3 R116A mutant) and one tRNA-Gln
Method: single particle / : Lin TY, Jezowski J, Glatt S

EMDB-19832:
Human pseudouridine synthase 3 (PUS3 D118A mutant) and two tRNA-Arg
Method: single particle / : Lin TY, Jezowski J, Glatt S

EMDB-19833:
Human pseudouridine synthase 3 (PUS3 D118A mutant) and two pre-tRNA-Arg
Method: single particle / : Lin TY, Jezowski J, Glatt S

EMDB-19834:
Human pseudouridine synthase 3 (PUS3 R116A mutant)
Method: single particle / : Lin TY, Glatt S

EMDB-19835:
Human pseudouridine synthase 3 (PUS3 K119A mutant)
Method: single particle / : Lin TY, Glatt S

EMDB-19836:
Human pseudouridine synthase 3 (wild type)
Method: single particle / : Lin TY, Glatt S

PDB-8okd:
Human pseudouridine synthase 3 and tRNA-Gln
Method: single particle / : Lin TY, Glatt S

PDB-9enb:
Human pseudouridine synthase 3 (PUS3 R116A mutant) and two tRNA-Gln
Method: single particle / : Lin TY, Jezowski J, Glatt S

PDB-9enc:
Human pseudouridine synthase 3 (PUS3 R116A mutant) and one tRNA-Gln
Method: single particle / : Lin TY, Jezowski J, Glatt S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more