[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 203 items for (author: kong & se)

EMDB-53313:
Structure of the MEGF8-MOSMO complex with nanobody 270 (Focused refinement)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53321:
Focused refinement of the MGRN1 ubiquitin ligase in complex with MEGF8, MOSMO and nanobody 270
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53322:
Structure of the MMM ubiquitin ligase complex with nanobody 270 (Consensus map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53323:
Cryo-EM structure of the MMM ubiquitin ligase complex with nanobody 270 (Composite map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53327:
Structure of the helix-stabilized MMM ubiquitin ligase complex with nanobody 270 (Consensus map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53328:
Focused refinement of the MGRN1 ubiquitin ligase in complex with helix-stabilized MEGF8, MOSMO and nanobody 270
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53329:
Cryo-EM structure of the helix-stabilized MMM ubiquitin ligase complex with nanobody 270 (Composite map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Steyaert J, Bazan F, Rouse S, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53336:
Focused refinement of the MEGF8-MOSMO complex with nanobody 992
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53337:
Focused refinement of the MEGF8 and MOSMO extracellular domains with nanobody 992
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53338:
Focused refinement of the MGRN1 ubiquitin ligase in complex with MEGF8, MOSMO and nanobody 992
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53339:
Structure of the MMM ubiquitin ligase complex with nanobody 992 (Consensus map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53340:
Cryo-EM structure of the MMM ubiquitin ligase complex with nanobody 992 (Composite map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Sarkar P, Latorraca NR, Lartey D, Gao L, Milenkovic L, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-53367:
Cryo-EM structure of the binary MEGF8-MOSMO complex with nanobody 270
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-57249:
Focused refinement of the helix-stabilized MEGF8-MOSMO complex with nanobody 270
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

PDB-9qqs:
Structure of the MEGF8-MOSMO complex with nanobody 270 (Focused refinement)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

PDB-9qru:
Cryo-EM structure of the MMM ubiquitin ligase complex with nanobody 270 (Composite map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

PDB-9qs6:
Cryo-EM structure of the helix-stabilized MMM ubiquitin ligase complex with nanobody 270 (Composite map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Steyaert J, Bazan F, Rouse S, Marqusee S, Kong JH, Rohatgi R, Siebold C

PDB-9qsh:
Cryo-EM structure of the MMM ubiquitin ligase complex with nanobody 992 (Composite map)
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

PDB-9qty:
Cryo-EM structure of the binary MEGF8-MOSMO complex with nanobody 270
Method: single particle / : Williams C, Carrique L, Pardon E, Nocka LM, Hedger G, Pusapati GV, Parashara P, Latorraca NR, Sarkar P, Lartey D, Gao L, Milenkovic L, Chalk R, Steyaert J, Bazan F, Rouse SL, Marqusee S, Kong JH, Rohatgi R, Siebold C

EMDB-72906:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

PDB-9yfu:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

EMDB-60599:
SARS-CoV-2 spike (Wuhan-Hu-1) in the closed conformation induced by Ad5-nCoV vaccine
Method: subtomogram averaging / : Dong D, Song Y, Li S

EMDB-60600:
SARS-CoV-2 spike (Wuhan-Hu-1) in the One-RBD-up conformation induced by Ad5-nCoV vaccine
Method: subtomogram averaging / : Dong D, Song Y, Li S

EMDB-60601:
SARS-CoV-2 spike (Omicron) in the closed conformation induced by Ad5-nCoV vaccine
Method: subtomogram averaging / : Dong D, Song Y, Li S

EMDB-60602:
SARS-CoV-2 spike (Omicron) in the One-RBD-up conformation induced by Ad5-nCoV vaccine
Method: subtomogram averaging / : Dong D, Song Y, Li S

EMDB-60981:
Human KCNQ2-CaM-Ebio2 Complex in the Presence of PIP2
Method: single particle / : Yang Z, Guo J

EMDB-60982:
human KCNQ2-CaM-Ebio3 Complex in the Presence of PIP2
Method: single particle / : Yang Z, Guo J

PDB-9ixy:
Human KCNQ2-CaM-Ebio2 Complex in the Presence of PIP2
Method: single particle / : Yang Z, Guo J

PDB-9ixz:
human KCNQ2-CaM-Ebio3 Complex in the Presence of PIP2
Method: single particle / : Yang Z, Guo J

EMDB-46715:
MERS NTD-specific polyclonal antibodies
Method: single particle / : Ward AB, Bangaru S

EMDB-41569:
Cryo-EM structure of HmAb64 scFv in complex with CNE40 SOSIP trimer
Method: single particle / : Chan KW, Kong XP

PDB-8tr3:
Cryo-EM structure of HmAb64 scFv in complex with CNE40 SOSIP trimer
Method: single particle / : Chan KW, Kong XP

EMDB-36254:
Structure of the auxin exporter PIN1 in Arabidopsis thaliana in the Naproxen-bound state
Method: single particle / : Sun L, Liu X, Yang Z, Xia J

PDB-8jh5:
Structure of the auxin exporter PIN1 in Arabidopsis thaliana in the Naproxen-bound state
Method: single particle / : Sun L, Liu X, Yang Z, Xia J

EMDB-41730:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Ribavirin
Method: single particle / : Wright NJ, Lee SY

EMDB-41731:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in MSP2N2 nanodiscs, apo state
Method: single particle / : Wright NJ, Lee SY

EMDB-41732:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with GS-441524, consensus reconstruction
Method: single particle / : Wright NJ, Lee SY

EMDB-41733:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with GS-441524, subset reconstruction
Method: single particle / : Wright NJ, Lee SY

EMDB-41734:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with N-hydroxycytidine
Method: single particle / : Wright NJ, Lee SY

EMDB-41735:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with PSI-6206
Method: single particle / : Wright NJ, Lee SY

EMDB-41736:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-INT1 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41737:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-INT3 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41738:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT2-INT2-INT2 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41739:
Cryo-EM structure of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 2, INT2-INT1-INT1 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41740:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, consensus reconstruction
Method: single particle / : Wright NJ, Lee SY

EMDB-41741:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, OFS-OFS-OFS conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41742:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, OFS-OFS-INT1 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41743:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, OFS-OFS-INT3 conformation
Method: single particle / : Wright NJ, Lee SY

EMDB-41744:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT1-INT1-OFS conformation (from ensemble analysis)
Method: single particle / : Wright NJ, Lee SY

EMDB-41745:
Cryo-EM reconstruction of bovine concentrative nucleoside transporter 3 in complex with Molnupiravir, condition 1, INT3-INT3-OFS conformation
Method: single particle / : Wright NJ, Lee SY

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more