[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 83 items for (author: koen & g)

EMDB-51786:
Cryo-EM Structure of human OAS2 Dimer
Method: single particle / : Merold VR, Lammens K, de Oliveira Mann CC

PDB-9h1z:
Cryo-EM Structure of human OAS2 Dimer
Method: single particle / : Merold VR, Lammens K, de Oliveira Mann CC

EMDB-43745:
SARS-CoV-2 M protein dimer in complex with JNJ-9676 and Fab-B
Method: single particle / : Yin Y, Van Damme E

PDB-8w2e:
SARS-CoV-2 M protein dimer in complex with JNJ-9676 and Fab-B
Method: single particle / : Yin Y, Van Damme E

EMDB-41869:
BG505.664 SOSIP in complex with polyclonal antibodies from NHP 8131 (gp120 glycan hole, gp41 glycan hole/fusion peptide and trimer base epitopes)
Method: single particle / : Zhang S, Ward AB

EMDB-41870:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8131 (gp120-gp120 interface epitope)
Method: single particle / : Zhang S, Ward AB

EMDB-41871:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8147 (C3/V5, V1/V2/V3 apex, gp41 glycan hole/fusion peptide and trimer base epitopes)
Method: single particle / : Zhang S, Ward AB

EMDB-41872:
BG505.664 Env SOSIP in complex with polyclonal antibodies from NHP 8147 (gp120 glycan hole epitope)
Method: single particle / : Zhang S, Ward AB

EMDB-41972:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP A12N030 (CD4bs, C3V5 and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41973:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP A12N030 (gp41GH/FP and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41974:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (gp41GH/FP and gp120GH epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41975:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (gp120GH and base epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41976:
GT1.1 SOSIP in complex with wk39 polyclonal antibodies from NHP DC8G (V1V2V3 and gp120GH epitopes)
Method: single particle / : van Schooten J, Ozorowski G, Ward AB

EMDB-41977:
GT1.1 SOSIP-CC2 in complex with wk80 polyclonal antibodies from NHP 8229 (V1V2V3, C3V5, CD4bs, gp41GH/FP and base epitopes)
Method: single particle / : Sewell LM, Ozorowski G, Ward AB

EMDB-41978:
GT1.1 SOSIP-CC2 in complex with wk80 polyclonal antibodies from NHP 8239 (gp120GH, gp41GH/FP, CD4bs, and base epitopes)
Method: single particle / : Sewell LM, Ozorowski G, Ward AB

EMDB-50815:
Rea1 delta AAA2H2alpha ATPgS structure
Method: single particle / : Busselez J, Schmidt H

EMDB-50816:
Rea1 D2915A-R2976A-D3042A mutant ATP conformation I
Method: single particle / : Busselez J, Schmidt H

EMDB-50817:
Rea1 D2915A-R2976A-D3042A ATP conformation II
Method: single particle / : Busselez J, Schmidt H

EMDB-50818:
Rea1 D2915A-R2976A-D3042A mutant ATP conformation III
Method: single particle / : Busselez J, Schmidt H

EMDB-18702:
Endosomal membrane tethering complex CORVET, Vps8-Vps11 local refinement map
Method: single particle / : Shvarev D, Koenig C, Susan N, Langemeyer L, Walter S, Perz A, Froehlich F, Ungermann C, Moeller A

EMDB-18703:
Endosomal membrane tethering complex CORVET, Vps8 beta propeller local refinement map
Method: single particle / : Shvarev D, Koenig C, Susan N, Langemeyer L, Walter S, Perz A, Froehlich F, Ungermann C, Moeller A

EMDB-18704:
Endosomal membrane tethering complex CORVET, SNARE binding module local refinement map
Method: single particle / : Shvarev D, Koenig C, Susan N, Langemeyer L, Walter S, Perz A, Froehlich F, Ungermann C, Moeller A

EMDB-18705:
Endosomal membrane tethering complex CORVET, core local refinement map
Method: single particle / : Shvarev D, Koenig C, Susan N, Langemeyer L, Walter S, Perz A, Froehlich F, Ungermann C, Moeller A

EMDB-18706:
Endosomal membrane tethering complex CORVET, Vps18 beta propeller local refinement map
Method: single particle / : Shvarev D, Koenig C, Susan N, Langemeyer L, Walter S, Perz A, Froehlich F, Ungermann C, Moeller A

EMDB-18707:
Endosomal membrane tethering complex CORVET, consensus map
Method: single particle / : Shvarev D, Koenig C, Susan N, Langemeyer L, Walter S, Perz A, Froehlich F, Ungermann C, Moeller A

EMDB-18708:
Endosomal membrane tethering complex CORVET, Vps11deltaN mutant
Method: single particle / : Shvarev D, Koenig C, Susan N, Langemeyer L, Walter S, Perz A, Froehlich F, Ungermann C, Moeller A

EMDB-18560:
SARS-CoV-2 S protein bound to human neutralising antibody UZGENT_G5
Method: single particle / : Remaut H, Reiter D, Vandenkerckhove L, Acar DD, Witkowski W, Gerlo S

EMDB-18571:
SARS-CoV-2 S protein bound to neutralising antibody UZGENT_A3
Method: single particle / : Remaut H, Reiter D, Vandenkerckhove L, Acar DD, Witkowski W, Gerlo S

PDB-8qpr:
SARS-CoV-2 S protein bound to human neutralising antibody UZGENT_G5
Method: single particle / : Remaut H, Reiter D, Vandenkerckhove L, Acar DD, Witkowski W, Gerlo S

PDB-8qq0:
SARS-CoV-2 S protein bound to neutralising antibody UZGENT_A3
Method: single particle / : Remaut H, Reiter D, Vandenkerckhove L, Acar DD, Witkowski W, Gerlo S

EMDB-15677:
Cryo-EM structure for mouse leptin in complex with the mouse LEP-R ectodomain (1:2 mLEP:mLEPR model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-15678:
Mouse leptin:LEP-R complex cryoEM structure (3:3 model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-15679:
Cryo-EM structure for a 3:3 complex between mouse leptin and the mouse LEP-R ectodomain (local refinement)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-15680:
Human leptin in complex with the human LEP-R ectodomain fused to a C-terminal trimeric isoleucine GCN4 zipper (2:2 model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-15681:
Human leptin in complex with the human LEP-R ectodomain fused to a C-terminal trimeric isoleucine GCN4 zipper (closed 3:3 model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-15683:
Human leptin in complex with the human LEP-R ectodomain fused to a C-terminal trimeric isoleucine GCN4 zipper (open 3:3 model).
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-15899:
Cryo-EM structure for the mouse LEPR-CRH2:Leptin:LEPR-Ig complex following symmetry expansion in combination with local refinement
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8avb:
Cryo-EM structure for mouse leptin in complex with the mouse LEP-R ectodomain (1:2 mLEP:mLEPR model).
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8avc:
Mouse leptin:LEP-R complex cryoEM structure (3:3 model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8avd:
Cryo-EM structure for a 3:3 complex between mouse leptin and the mouse LEP-R ectodomain (local refinement)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8ave:
Human leptin in complex with the human LEP-R ectodomain fused to a C-terminal trimeric isoleucine GCN4 zipper (2:2 model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8avf:
Human leptin in complex with the human LEP-R ectodomain fused to a C-terminal trimeric isoleucine GCN4 zipper (closed 3:3 model)
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8avo:
Human leptin in complex with the human LEP-R ectodomain fused to a C-terminal trimeric isoleucine GCN4 zipper (open 3:3 model).
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

PDB-8b7q:
Cryo-EM structure for the mouse LEPR-CRH2:Leptin:LEPR-Ig complex following symmetry expansion in combination with local refinement
Method: single particle / : Verstraete K, Savvides SN, Verschueren KG, Tsirigotaki A

EMDB-29020:
Structure of dengue virus (DENV2) in complex with prM12, an anti-PrM monoclonal antibody
Method: single particle / : Dowd AD, Sirohi D, Speer S, Mukherjee S, Govero J, Aleshnick M, Larman B, Sukupolvi-Petty S, Sevvana M, Miller AS, Klose T, Zheng A, Kielian M, Kuhn RJ, Diamond MS, Pierson TC

EMDB-29021:
Structure of dengue virus (DENV2) in complex with prM13, an anti-PrM monoclonal antibody
Method: single particle / : Dowd AD, Sirohi D, Speer S, Mukherjee S, Govero J, Aleshnick M, Larman B, Sukupolvi-Petty S, Sevvana M, Miller AS, Klose T, Zheng A, Kielian M, Kuhn RJ, Diamond MS, Pierson TC

PDB-8fe3:
Structure of dengue virus (DENV2) in complex with prM12, an anti-PrM monoclonal antibody
Method: single particle / : Dowd AD, Sirohi D, Speer S, Mukherjee S, Govero J, Aleshnick M, Larman B, Sukupolvi-Petty S, Sevvana M, Miller AS, Klose T, Zheng A, Kielian M, Kuhn RJ, Diamond MS, Pierson TC

PDB-8fe4:
Structure of dengue virus (DENV2) in complex with prM13, an anti-PrM monoclonal antibody
Method: single particle / : Dowd AD, Sirohi D, Speer S, Mukherjee S, Govero J, Aleshnick M, Larman B, Sukupolvi-Petty S, Sevvana M, Miller AS, Klose T, Zheng A, Kielian M, Kuhn RJ, Diamond MS, Pierson TC

EMDB-14964:
HOPS tethering complex from yeast, composite map
Method: single particle / : Shvarev D, Schoppe J, Koenig C, Perz A, Fuellbrunn N, Kiontke S, Langemeyer L, Januliene D, Schnelle K, Kuemmel D, Froehlich F, Moeller A, Ungermann C

EMDB-14965:
HOPS tethering complex from yeast, consensus map covering the upper part of the complex
Method: single particle / : Shvarev D, Schoppe J, Koenig C, Perz A, Fuellbrunn N, Kiontke S, Langemeyer L, Januliene D, Schnelle K, Kuemmel D, Froehlich F, Moeller A, Ungermann C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more