[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,893 items for (author: kim & sh)

EMDB-53004:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

PDB-9qc6:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

EMDB-75840:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

PDB-11mr:
Cryo-EM structure of CRBN in complex with HBS1L and TNG-4857 (focused refinement)
Method: single particle / : Whittington DA

EMDB-76895:
The Kaggle CryoET Object Identification Challenge: first place 80S ribosome
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76896:
The Kaggle CryoET Object Identification Challenge: first place apo-ferritin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76898:
The Kaggle CryoET Object Identification Challenge: first place virus-like-particle
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76899:
The Kaggle CryoET Object Identification Challenge: first place beta-galactosidase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76900:
The Kaggle CryoET Object Identification Challenge: first place beta-amylase
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-76901:
The Kaggle CryoET Object Identification Challenge: first place thyroglobulin
Method: subtomogram averaging / : Peck A, Hutchings J, Schwartz J, Paraan M

EMDB-72377:
Staphylococcal Enterotoxin C in complex with NB C107 and NB C112
Method: single particle / : Hang W, Kim J, Taylor DJ, Shi Y

PDB-9xzx:
Staphylococcal Enterotoxin C in complex with NB C107 and NB C112
Method: single particle / : Hang W, Kim J, Taylor DJ, Shi Y

EMDB-71307:
N49P7-FR Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-71308:
eN49P7-FRv1-23 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9p6e:
N49P7-FR Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

PDB-9p6g:
eN49P7-FRv1-23 Fab in complex with BG505 MD39 SOSIP and RM20A3 Fab
Method: single particle / : Phulera S, Ozorowski G, Ward AB

EMDB-73949:
Q23.MD39 in Complex with Fabs from antibodies CH01 and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-73950:
CryoEM map of CK52.1 in complex with Q23.V033GT
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9z9l:
Q23.MD39 in Complex with Fabs from antibodies CH01 and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-75038:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

PDB-10ay:
Cryo-EM structure of CRBN-DDB1 in complex with HBS1L and TNG961
Method: single particle / : Whittington DA

EMDB-73961:
CK52.1 Fab in complex with Q23.RH-GT. Env
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-75897:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75900:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-54248:
Trispecific fab 17 with O1M 93C virus like particle
Method: single particle / : Stuart DI, Duyvesteyn HME, Ren J, Fry EE

EMDB-54261:
Trispecific fab 34 with O1M 93C virus like particle
Method: single particle / : Stuart DI, Duyvesteyn HME, Ren J, Fry EE

EMDB-54263:
Trispecific fab 49 with O1M 93C virus like particle
Method: single particle / : Stuart DI, Duyvesteyn HME, Ren J, Fry EE

EMDB-56885:
NorA bound to miniprotein I-23
Method: single particle / : Lamon G, Mishra P, Chazin-Gray A, Baker D, Traaseth NJ

PDB-28vj:
NorA bound to miniprotein I-23
Method: single particle / : Lamon G, Mishra P, Chazin-Gray A, Baker D, Traaseth NJ

EMDB-72906:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

PDB-9yfu:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

EMDB-75890:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of PP7 virus-like-particle with VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75895:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75896:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75898:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-75899:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome without VPP (partial dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-73285:
Structure of human VCP/p97 hexamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-73287:
Structure of human VCP/p97 dodecamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-75391:
Structure of human VCP/p97 dodecamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-75392:
Structure of human VCP/p97 hexamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-10qq:
Structure of human VCP/p97 dodecamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-10qr:
Structure of human VCP/p97 hexamer bound to ADP (DMSO control)
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-9yp6:
Structure of human VCP/p97 hexamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

PDB-9yp8:
Structure of human VCP/p97 dodecamer bound to ADP and UTE-156
Method: single particle / : Tamayo-Jaramillo D, Shen PS

EMDB-66181:
Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
Method: single particle / : Yue XY, Wang GL, Yu LJ

PDB-9wqv:
Cryo-EM structure of LH1-RC from Rhodovulum sulfidophilum
Method: single particle / : Yue XY, Wang GL, Yu LJ

EMDB-71770:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

EMDB-71775:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

PDB-9pns:
Structure of human serotonin transporter bound to small molecule zPZd in lipid nanodisc and NaCl
Method: single particle / : Billesboelle CB, Manglik A

PDB-9ppq:
Locally-refined Mu-Opioid Receptor bound with novel compound 0505 (3-[({[(1P)-1-(3-chlorophenyl)-1H-pyrazol-3-yl]methyl}amino)methyl]phenol)
Method: single particle / : Kim JY, Wu Y, Manglik A, Shoichet BK

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more