[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 4,566 items for (author: kan & j)

EMDB-64468:
Subtomogram averaging of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: subtomogram averaging / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64469:
Subtomogram averaging of in vitro assembly product of untagged D13, Twister
Method: subtomogram averaging / : Kim SM, Jang YT

EMDB-64470:
Cryo-EM structure of in vitro assembly product of untagged D13, Twister
Method: single particle / : Kim SM, Jang YT

EMDB-64471:
Two interacting D13 trimers at mode I interface in Twister assembly
Method: single particle / : Kim SM, Jang YT

EMDB-64472:
Two interacting D13 trimers at mode II interface in Twister assembly
Method: single particle / : Kim SM, Jang YT

EMDB-64473:
Two interacting D13 trimers at mode III interface in Twister assembly
Method: single particle / : Kim SM, Jang YT

EMDB-64474:
Cryo-EM structure of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64475:
Cryo-EM structure of eGFP-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64476:
Cryo-EM structure of A17(1-16) peptide-bound D13 trimer from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-64477:
Cryo-EM structure of A17(1-16) peptide-bound D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-80609:
Cryo-EM structure of the A17(1-16) peptide-bound N-terminal 17 residue truncated D13 trimer from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

PDB-26fe:
Cryo-EM structure of the A17(1-16) peptide-bound N-terminal 17 residue truncated D13 trimer from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

PDB-9usx:
Cryo-EM structure of His6-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

PDB-9usy:
Cryo-EM structure of eGFP-tagged D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

PDB-9usz:
Cryo-EM structure of A17(1-16) peptide-bound D13 trimer from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

PDB-9ut0:
Cryo-EM structure of A17(1-16) peptide-bound D13 assembled into scaffold-like particles from vaccinia virus
Method: single particle / : Jang YT, Kim SM, Lee SN, Ryu BH, Jeong HS, Kang ES, Sul JH, Kim YH, Jo DG, Hyun JK

EMDB-65488:
Cryo-EM structure of LARS1:IARS1 complex
Method: single particle / : Kim Y, Kim JC, Kim DW, Kim J, Lee J, Kim S, Kang JY, Park HS

PDB-9w01:
Cryo-EM structure of LARS1:IARS1 complex
Method: single particle / : Kim Y, Kim JC, Kim DW, Kim J, Lee J, Kim S, Kang JY, Park HS

EMDB-54659:
Cryo-EM structure of Rat NHE6 D293A variant
Method: single particle / : Jung S, Gulati A, Reichenbach T, Kokane S, Yeo H, Drew D

EMDB-54660:
Cryo-EM structure of Rat NHE6 in detergent
Method: single particle / : Yeo H, Jung S, Reichenbach T, Kokane S, Gulati A, Drew D

EMDB-54661:
Cryo-EM structure of Rat NHE6 in nanodisc
Method: single particle / : Yeo H, Jung S, Reichenbach T, Kokane S, Gulati A, Drew D

EMDB-54662:
Cryo-EM structure of Rat NHE6 K351A variant
Method: single particle / : Jung S, Kokane S, Reichenbach T, Yeo H, Gulati A, Drew D

PDB-9s8c:
Cryo-EM structure of Rat NHE6 D293A variant
Method: single particle / : Jung S, Gulati A, Reichenbach T, Kokane S, Yeo H, Drew D

PDB-9s8d:
Cryo-EM structure of Rat NHE6 in detergent
Method: single particle / : Yeo H, Jung S, Reichenbach T, Kokane S, Gulati A, Drew D

PDB-9s8e:
Cryo-EM structure of Rat NHE6 in nanodisc
Method: single particle / : Yeo H, Jung S, Reichenbach T, Kokane S, Gulati A, Drew D

PDB-9s8g:
Cryo-EM structure of Rat NHE6 K351A variant
Method: single particle / : Jung S, Kokane S, Reichenbach T, Yeo H, Gulati A, Drew D

EMDB-55929:
Structure of human CLN8 in an apo-state
Method: single particle / : Lacabanne D, Sheokand PK, Ruprecht JJ, Petkevicius K

EMDB-56021:
Structure of human CLN8 in the presence of docosahexaenoate
Method: single particle / : Lacabanne D, Sheokand PK, Ruprecht JJ, Petkevicius K

EMDB-56022:
Structure of human CLN8 in the presence of oleate
Method: single particle / : Lacabanne D, Sheokand PK, Ruprecht JJ, Petkevicius K

PDB-9thk:
Structure of human CLN8 in an apo-state
Method: single particle / : Lacabanne D, Sheokand PK, Ruprecht JJ, Petkevicius K

PDB-9tk9:
Structure of human CLN8 in the presence of docosahexaenoate
Method: single particle / : Lacabanne D, Sheokand PK, Ruprecht JJ, Petkevicius K

PDB-9tka:
Structure of human CLN8 in the presence of oleate
Method: single particle / : Lacabanne D, Sheokand PK, Ruprecht JJ, Petkevicius K

EMDB-75346:
Membrane protein solubilization and structure determination using de novo-designed amphipathic proteins
Method: single particle / : Borst AJ, Weidle C

EMDB-75350:
WRAP-TP0698
Method: single particle / : Borst AJ

EMDB-77343:
Cryo-EM global density map of BA.1-S/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

EMDB-77344:
Structure of BA.1-S-RBD/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

EMDB-77347:
Cryo-EM global density map of BA.4-S/Ab#10-M30W-S94M IgG
Method: single particle / : Du J, Pallesen J

EMDB-77348:
Structure of BA.4-S-RBD/Ab#10-M30W-S94M
Method: single particle / : Du J, Pallesen J

PDB-36az:
Structure of BA.1-S-RBD/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

PDB-36bb:
Structure of BA.4-S-RBD/Ab#10-M30W-S94M
Method: single particle / : Du J, Pallesen J

EMDB-56861:
In situ ribosome from HeLa cells
Method: subtomogram averaging / : Gemin O, Babenko A, Papp G

EMDB-58529:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-N-terminal monoclonal antibody
Method: single particle / : Lau RJ, Wu GHY, Barritt JD, Huemer CB, Matthews S

EMDB-58555:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-PA-domain monoclonal antibody
Method: single particle / : Lau RJ, Barritt JD, Wu GHY, Huemer CB, Matthews S

PDB-31mr:
CryoEM structure of a catalytically inactive CXC Chemokine-degrading protease SpyCEP from Streptococcus pyogenes complexed with an anti-PA-domain monoclonal antibody
Method: single particle / : Lau RJ, Barritt JD, Wu GHY, Huemer CB, Matthews S

EMDB-65237:
IF1 bound bovine F-ATP synthase planar dimer
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65238:
IF1 bound bovine ATP synthase tetramer, C2 symmetry imposed
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65239:
IF1 bound bovine ATP synthase monomer: rotary state 1, F1 focused map
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65240:
IF1 bound bovine ATP synthase tetramer, no symmetry imposed
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65241:
IF1 bound bovine ATP synthase tetramer: Fo focused map of the state 1 protomer of dimer B
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

EMDB-65242:
IF1 bound bovine ATP synthase monomer, rotary state 2
Method: single particle / : Nakano A, Jiko C, Yamashita E, Yokoyama K, Gerle C

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more