[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 48 items for (author: jr & jb)

EMDB-28198:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with LLNL-199

EMDB-28199:
Cryo-EM map of SARS-CoV-2 Omicron BA.2 spike in complex with 2130-1-0114-112

EMDB-41667:
Cryo-EM structure of the PP2A:B55-FAM122A complex, B55 body

EMDB-41668:
Cryo-EM structure of the PP2A:B55-FAM122A complex, PP2Ac body

EMDB-40644:
Cryo-EM structure of the PP2A:B55-FAM122A complex

EMDB-41604:
Cryo-EM structure of the PP2A:B55-ARPP19 complex

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment

EMDB-28041:
Cryo-EM Structure of human ABCA7 in BPL/Ch Nanodiscs

EMDB-28044:
Human ABCA7 in BPL/Ch nanodiscs (Map 2)

EMDB-28047:
Cryo-EM Structure of human ABCA7 in PE/Ch nanodiscs

EMDB-28050:
Cryo-EM structure of human ABCA7 in Digitonin

EMDB-28451:
Cryo-EM Structure of Nanodisc reconstituted human ABCA7 EQ mutant in ATP bound closed state

EMDB-25062:
In-situ structure of SIV trimer

EMDB-26507:
SARS-CoV-2 spike in complex with Multivalent miniprotein inhibitor FUS231-P24 (2RBDs open)

EMDB-26508:
SARS-CoV-2 spike in complex with multivalent miniprotein inhibitor FUS231-P24 (3RBDs open)

EMDB-26509:
SARS-CoV-2 spike in complex with multivalent miniprotein inhibitor FUS31-G10 (2RBDs open)

EMDB-26510:
SARS-CoV-2 spike in complex with multivalent miniprotein inhibitor FUS31-G10 (3RBDs open)

EMDB-26511:
SARS-CoV-2 spike in complex with AHB2-2GS-SB175 (local refinement of the RBD and AHB2)

EMDB-26512:
SARS-CoV-2 spike in complex with AHB2-2GS-SB175

EMDB-25448:
Negative-stain EM reconstruction of SpFN_1B-06-PL, a SARS-CoV-2 spike fused to H.pylori ferritin nanoparticle vaccine candidate

EMDB-25449:
RFN_131, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Receptor-Binding Domain

EMDB-25450:
pCoV146, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike Receptor-Binding and N-Terminal Domains

EMDB-25451:
pCoV111, a Ferritin-based Nanoparticle Vaccine Candidate Displaying the SARS-CoV-2 Spike S1 Subunit

EMDB-13857:
Beta049 fab in complex with SARS-CoV2 beta-Spike glycoprotein, The Beta mAb response underscores the antigenic distance to other SARS-CoV-2 variants

EMDB-13868:
Beta-50 fab in complex with SARS-CoV-2 beta-Spike glycoprotein

EMDB-13869:
COVOX-222 fab in complex with SARS-CoV-2 beta-Spike glycoprotein

EMDB-13870:
Beta-43 fab in complex with SARS-CoV-2 beta-Spike glycoprotein

EMDB-13871:
Beta-26 fab in complex with SARS-CoV-2 beta-Spike glycoprotein

EMDB-13872:
Beta-32 fab in complex with SARS-CoV-2 beta-Spike glycoprotein

EMDB-13873:
Beta-53 fab in complex with SARS-CoV-2 beta-Spike glycoprotein

EMDB-13874:
Beta-44 fab in complex with SARS-CoV-2 beta-Spike glycoprotein

EMDB-13875:
Beta-06 fab in complex with SARS-CoV-2 beta-Spike glycoprotein

EMDB-23719:
EBOV GP bound to rEBOV-442 and rEBOV-515 Fabs

EMDB-24663:
Cryo-EM density map of the outer dynein arm core from bovine tracheal cilia

EMDB-24664:
Composite cryo-EM density map of the 48-nm repeat doublet microtubule from bovine tracheal cilia

EMDB-12095:
Cryo-EM structure of mitochondrial complex I from Mus musculus inhibited by IACS-2858 at 3.0 A

EMDB-23898:
SARS-CoV-2 Spike in complex with neutralizing Fab SARS2-38 (three down conformation)

EMDB-23899:
SARS-CoV-2 Spike RBD in complex with neutralizing Fab SARS2-38 (local refinement)

EMDB-22106:
High resolution cryoEM structure of huntingtin in complex with HAP40

EMDB-22078:
Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis

EMDB-21965:
Negative stain EM map of SARS CoV-2 spike protein (trimer)

EMDB-21974:
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2165

EMDB-21975:
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2196

EMDB-21976:
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2130

EMDB-21977:
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2130 and Fab COV2-2196

EMDB-3459:
Hsp21 dodecamer, structural model based on cryo-EM and homology modelling

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlc1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more