[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 19,464 items for (author: ji & x)

EMDB-72910:
Class 2 SARS-CoV-2 Nsp1 Endonuclease Complex
Method: single particle / : Michael MV, Shravani SB, Swapnil SD, Yong YX

EMDB-72911:
Class 1 SARS-CoV-2 Nsp1 Endonuclease Complex
Method: single particle / : Michael MV, Shravani SB, Swapnil SD, Yong YX

EMDB-71076:
Human liver phosphofructokinase-1 bound to XJ-4-85
Method: single particle / : Lynch EM, Jiang X, Hsu KL, Kollman JM

PDB-9p0j:
Human liver phosphofructokinase-1 bound to XJ-4-85
Method: single particle / : Lynch EM, Jiang X, Hsu KL, Kollman JM

EMDB-70529:
sx20S complex (NSF-alphaSNAP-syntaxin-1a), non-hydrolyzing, class 1
Method: single particle / : White KI, Brunger AT

EMDB-70536:
sx20S complex (NSF-alphaSNAP-syntaxin-1a), 4:4 alphaSNAP-syntaxin-1a subcomplex local refinement, non-hydrolyzing, class 1
Method: single particle / : White KI, Brunger AT

PDB-9oj2:
sx20S complex (NSF-alphaSNAP-syntaxin-1a), non-hydrolyzing, class 1
Method: single particle / : White KI, Brunger AT

PDB-9ojj:
sx20S complex (NSF-alphaSNAP-syntaxin-1a), 4:4 alphaSNAP-syntaxin-1a subcomplex local refinement, non-hydrolyzing, class 1
Method: single particle / : White KI, Brunger AT

EMDB-63802:
Structure of the intial complex in filament assembly at 3.31 angstroms resolution, conformation 1.
Method: single particle / : Chen LX, Jiang WX, Cheng XQ, Dong X, Xing Q

PDB-9mcg:
Structure of the intial complex in filament assembly at 3.31 angstroms resolution, conformation 1.
Method: single particle / : Chen LX, Jiang WX, Cheng XQ, Dong X, Xing Q

EMDB-67942:
a bacterial caspase bound to ligand
Method: single particle / : Wang WH, Feng Y

EMDB-67943:
a bacterial caspase
Method: single particle / : Wang WH, Feng Y

EMDB-67944:
A bacterial caspase in an inhibited state
Method: single particle / : Wang WH, Feng Y

EMDB-59152:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor IID432
Method: single particle / : Schenk A, Deniston C

PDB-32to:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor IID432
Method: single particle / : Schenk A, Deniston C

EMDB-73799:
Cryo-EM structure of the human PRMT5:MEP50:pICln complex at a 4:4:4 stoichiometric ratio
Method: single particle / : Xu X, Chi Z, Jiang W, Li C

EMDB-73801:
Cryo-EM structure of the human PRMT5:MEP50:pICln complex at a 4:3:4 stoichiometric ratio
Method: single particle / : Xu X, Chi Z, Jiang W, Li C

PDB-9z49:
Cryo-EM structure of the human PRMT5:MEP50:pICln complex at a 4:4:4 stoichiometric ratio
Method: single particle / : Xu X, Chi Z, Jiang W, Li C

PDB-9z4a:
Cryo-EM structure of the human PRMT5:MEP50:pICln complex at a 4:3:4 stoichiometric ratio
Method: single particle / : Xu X, Chi Z, Jiang W, Li C

EMDB-68583:
Cryo EM structure of SARS-COV-2 (BA.4) RBD in complex with THZ937 Fab (local refine)
Method: single particle / : Wang X, Guo F

PDB-22pd:
Cryo EM structure of SARS-COV-2 (BA.4) RBD in complex with THZ937 Fab (local refine)
Method: single particle / : Wang X, Guo F

EMDB-81988:
Yeast-expressed polio type 3 stabilized virus-like particles
Method: single particle / : Hong Q, Cong Y

EMDB-81997:
Yeast-expressed polio type 3 expanded virus-like particles
Method: single particle / : Hong Q, Cong Y

PDB-43mi:
Yeast-expressed polio type 3 stabilized virus-like particles
Method: single particle / : Hong Q, Cong Y

PDB-43mu:
Yeast-expressed polio type 3 expanded virus-like particles
Method: single particle / : Hong Q, Cong Y

EMDB-66628:
Structure of the HCoV-229E spike glycoprotein determined by subtomogram averaging
Method: subtomogram averaging / : Liang J, Peng C, Li S

EMDB-66645:
Structure of the vesicular stomatitis virus nucleocapsid subbox
Method: subtomogram averaging / : Liu K, Zhang J, Li S

PDB-9x6s:
Structure of Influenza Hemagglutinin (A/Puerto Rico/8/1934)
Method: subtomogram averaging / : Chen Y, Li S

PDB-9x6z:
Structure of the HCoV-229E spike glycoprotein determined by subtomogram averaging
Method: subtomogram averaging / : Liang J, Peng C, Li S

EMDB-66823:
Cryo-EM structure of the Bavachalcone bound FFAR4-Giq complex
Method: single particle / : Zhu S, Wang Z

EMDB-66824:
Cryo-EM structure of the Bavachalcone bound GPR120-Giq complex (local refinement)
Method: single particle / : Zhu S, Wang Z

PDB-9xfi:
Cryo-EM structure of the Bavachalcone bound FFAR4-Giq complex
Method: single particle / : Zhu S, Wang Z

PDB-9xfj:
Cryo-EM structure of the Bavachalcone bound GPR120-Giq complex (local refinement)
Method: single particle / : Zhu S, Wang Z

EMDB-67234:
Overall structure of the human UBR4-KCMF1-Calmodulin complex
Method: single particle / : Hu Z, Yan R

PDB-9xtj:
Overall structure of the human UBR4-KCMF1-Calmodulin complex
Method: single particle / : Hu Z, Yan R

EMDB-66190:
The in situ structure of adjacent conoid fibers from Toxoplasma gondii tachyzoite
Method: subtomogram averaging / : Li Z, Du W, Yang J, Lai D, Lun Z, Guo Q

EMDB-68735:
local reifnement of 5HT2AR-miniGq heterotrimer in complex with a psychedelic psilocin
Method: single particle / : Tang L, Ji X, Cheng J, Wang S

EMDB-68737:
local refinement of 5HT2AR-miniGq heterotrimer in complex with a selective agonist IHCH-2330
Method: single particle / : Tang L, Ji X, Cheng J, Wang S

EMDB-68739:
local refinement of 5HT2BR-fab heterotrimer in complex with a novel antagonist IHCH-2330
Method: single particle / : Tang L, Ji X, Cheng J, Wang S

PDB-22wp:
local reifnement of 5HT2AR-miniGq heterotrimer in complex with a psychedelic psilocin
Method: single particle / : Tang L, Ji X, Cheng J, Wang S

PDB-22wr:
local refinement of 5HT2AR-miniGq heterotrimer in complex with a selective agonist IHCH-2330
Method: single particle / : Tang L, Ji X, Cheng J, Wang S

PDB-22wt:
local refinement of 5HT2BR-fab heterotrimer in complex with a novel antagonist IHCH-2330
Method: single particle / : Tang L, Ji X, Cheng J, Wang S

EMDB-75471:
Structure of human TM6SF1
Method: single particle / : Hong S, Li X

EMDB-75606:
Structure of cholesterol binding deficient human TM6SF1
Method: single particle / : Hong S, Li X

PDB-10up:
Structure of human TM6SF1
Method: single particle / : Hong S, Li X

PDB-11br:
Structure of cholesterol binding deficient human TM6SF1
Method: single particle / : Hong S, Li X

EMDB-68820:
CryoEM structure of EV-D68 US/MO/14-18947 mature virion
Method: single particle / : Liang SJ, Lou ZY

EMDB-68830:
CryoEM structure of EV-D68 US/MO/14-18947 in complex with MFSD6-L3
Method: single particle / : Liang SJ, Lou ZY

EMDB-68851:
CryoEM structure of EV-D68 US/KY/14-18953 mature virion
Method: single particle / : Liang SJ, Lou ZY

EMDB-69155:
CryoEM structure of EV-D68 US/KY/14-18953 in complex with MFSD6-L3
Method: single particle / : Liang SJ, Lou ZY

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more