[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 187 items for (author: jesse & im)

EMDB-49892:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-49893:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

PDB-9nws:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

PDB-9nwt:
Cryo-EM structure of DDB1dB:CRBN:mezigdomide:SALL4(392-449;G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-72825:
Human delta opioid receptor complex with mini-Gi and agonist DADLE
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72826:
Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3614
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72827:
Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3983
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72828:
receptor focused refinement of human delta opioid receptor complex with mini-Gi and DADLE
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72829:
receptor focused refinement of the human delta opioid complex with mini-Gi, agonist DADLE and allosteric modulator MIPS3614
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72830:
receptor focused refinement of human delta opioid receptor complex with mini-Gi, agonist DADLE and allosteric modulator MIPS3983
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72831:
conensus map of the human delta opioid complex with mini-Gi, agonist DADLE and allosteric modulator BMS-986187
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-72832:
receptor focused refinement of human delta opioid complex with mini-Gi, agonist DADLE and allosteric modulator BMS-986187
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

PDB-9ydp:
Human delta opioid receptor complex with mini-Gi and agonist DADLE
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

PDB-9ydq:
Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3614
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

PDB-9ydr:
Human delta opioid receptor complex with mini-Gi and agonist DADLE and allosteric modulator MIPS3983
Method: single particle / : Mobbs JI, Venugopal H, Thal DM

EMDB-70613:
Cryo-EM structure of rhesus antibody V033-Int1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

PDB-9omg:
Cryo-EM structure of rhesus antibody V033-a.I1 in complex with HIV Env trimer Q23.17 MD39
Method: single particle / : Roark RS, Shapiro L, Kwong PD

EMDB-55190:
Human Methionine Synthase With Methyltetrahydrofolate, N-Half From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-55191:
Human Methionine Synthase With Methyltetrahydrofolate, C-Half From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-55192:
Human Methionine Synthase With Methyltetrahydrofolate, Hydroxocobalamin, and SAM, N-Half From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-55193:
Human Methionine Synthase With Methyltetrahydrofolate, Hydroxocobalamin, and SAM, C-Half His-ON From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-55194:
Human Methionine Synthase With Methyltetrahydrofolate, Hydroxocobalamin, and SAM, C-Half His-OFF From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-55195:
Human Methionine Synthase With Methylcobalamin, N-Half From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-55196:
Human Methionine Synthase With Methylcobalamin, Activation Domain From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

PDB-9ssp:
Human Methionine Synthase With Methyltetrahydrofolate, N-Half From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

PDB-9ssq:
Human Methionine Synthase With Methyltetrahydrofolate, C-Half From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

PDB-9ssr:
Human Methionine Synthase With Methyltetrahydrofolate, Hydroxocobalamin, and SAM, N-Half From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

PDB-9sss:
Human Methionine Synthase With Methyltetrahydrofolate, Hydroxocobalamin, and SAM, C-Half His-ON From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

PDB-9sst:
Human Methionine Synthase With Methyltetrahydrofolate, Hydroxocobalamin, and SAM, C-Half His-OFF From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

PDB-9ssu:
Human Methionine Synthase With Methylcobalamin, N-Half From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

PDB-9ssv:
Human Methionine Synthase With Methylcobalamin, Activation Domain From Full-Length
Method: single particle / : Ferreira DSM, Yue WW, McCorvie TJ

EMDB-72209:
Focused cryo-EM map of DDB1dB:CRBN:mezigdomide:SALL4(392-449)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fishcer ES

EMDB-72215:
Focused cryo-EM map of DDB1dB:CRBN:mezigdomide:SALL4(392-449; G416A)
Method: single particle / : Park J, Hunkeler M, Roy Burman SS, Fischer ES

EMDB-70340:
FH_302_07 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70341:
FH_302_14 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70342:
FH_302_23 Fab in complex with BG505 MD39.3 SOSIP (negative stain)
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70343:
BG505 MD39.3-CC5 SOSIP in complex with V1V3 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70344:
BG505 MD39.3-CC5 SOSIP in complex with gp41-base epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-70345:
BG505 MD39.3-CC5 SOSIP in complex with C3V5 epitope polyclonal Fabs isolated from HVTN302 human trial after dose 3 of mRNA-gp151-CD4KO immunization
Method: single particle / : Lee WH, Ozorowski G, Ward AB

EMDB-46649:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

PDB-9d8v:
Cryo-EM structure of the BG505 SOSIPv2
Method: single particle / : DeLaitsch AT, Bjorkman PJ

EMDB-39097:
Cryo-ET structure of huntingtin actin complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

EMDB-39103:
Cryo-ET structure of huntingtin actin dimer complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

PDB-8yae:
Cryo-ET structure of huntingtin actin complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

PDB-8yao:
Cryo-ET structure of huntingtin actin dimer complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

EMDB-47426:
CryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody 52
Method: single particle / : Jaiswal D, Bajic G

PDB-9e21:
CryoEM structure of a broadly neutralizing anti-SARS-CoV-2 antibody 52
Method: single particle / : Jaiswal D, Bajic G

EMDB-54211:
Structure of the Ypt7 GEF complex Mon1-Ccz1 from Chaetomium Thermophilum
Method: single particle / : Wilmes S, Schaefer J, Moeller A, Kuemmel D

EMDB-54212:
Ypt7 in complex with its GEF Mon1-Ccz1
Method: single particle / : Wilmes S, Schaefer J, Moeller A, Kuemmel D

EMDB-54213:
human Fuzzy-Inturned
Method: single particle / : Wilmes S, Schaefer J, Januliene D, Moeller A, Kuemmel D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more