[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,210 items for (author: jen & a)

EMDB-49520:
Focused refinement of the prefusion F glycoprotein ectodomain of Nipah virus in complex with DS90 nanobody
Method: single particle / : Low YS, Isaacs A, Modhiran N, Watterson D

EMDB-71739:
Legionella Dot/Icm T4SS
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-72186:
Focused refinement map of the periplasmic part of the Legionella pneumophila T4SS.
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-72187:
Focused refinement map of the cytoplasmic region of the Legionella pneumophila T4SS.
Method: subtomogram averaging / : Dutka P, Liu Y, Maggi S, Jensen GJ

EMDB-75244:
Cryo-tomogram of a patch-like NLRP3 inflammasome condensate at the MTOC
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ


EMDB entry, No image

EMDB-75245:
Cryo-tomogram of a solid-like NLRP3 inflammasome condensate at the MTOC
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ

EMDB-75246:
Cryo-tomogram of the MTOC in human THP-1 cells
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ

EMDB-75247:
Cryo-tomogram of a matured NLRP3 inflammasome condensate at the MTOC
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ

EMDB-75248:
Cryo-tomogram of the MTOC in LPS-treated human THP-1 cells
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ

EMDB-75249:
Cryo-tomogram of NLRP3-associated vesicles residing at the Golgi following LPS treatment
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ

EMDB-75250:
Patch-like NLRP3 inflammasome condensate formed above or below the MTOC
Method: electron tomography / : Wang J, Wu M, Xiao L, Du G, Chen M, Magupalli VG, Dahlberg PD, Wu H, Jensen GJ

EMDB-75186:
Membrane-bound, reversed VP5* trimer (rotavirus spike protein)
Method: subtomogram averaging / : de Sautu M, Leistner C, Kirchhausen T, Jenni S, Harrison SC

PDB-10id:
Membrane-bound, reversed VP5* trimer (rotavirus spike protein)
Method: subtomogram averaging / : de Sautu M, Leistner C, Kirchhausen T, Jenni S, Harrison SC

EMDB-70791:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

PDB-9os2:
Cryo-EM structure of the DDB1/CRBN-MRT-5702-G3BP2 ternary complex
Method: single particle / : Quan C, Petzold G, Gainza P, Tsai J, Bunker RD, Wiedmer L, Donckele EJ

EMDB-55350:
Asymmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis with "short" coiled-coil domain
Method: single particle / : Lichti NP, Earp JC, Garaeva AA, Seeger MA

EMDB-55353:
Asymmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis with "long" coiled-coil domain
Method: single particle / : Lichti NP, Earp JC, Garaeva AA, Seeger MA

EMDB-55355:
Symmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis
Method: single particle / : Lichti NP, Earp JC, Garaeva AA, Seeger MA

PDB-9syj:
Asymmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis with "short" coiled-coil domain
Method: single particle / : Lichti NP, Earp JC, Garaeva AA, Seeger MA

PDB-9syt:
Asymmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis with "long" coiled-coil domain
Method: single particle / : Lichti NP, Earp JC, Garaeva AA, Seeger MA

PDB-9syv:
Symmetric hexameric MmpS4-MmpL4 complex from Mycobacterium tuberculosis
Method: single particle / : Lichti NP, Earp JC, Garaeva AA, Seeger MA

EMDB-55519:
cryo-EM structure of CPSF160-WDR33-ZC3H18
Method: single particle / : Kuhn CC, Chand MK, Todesca S, Williams K, Keidel A, Garland W, Jensen TH, Conti E

PDB-9t3x:
cryo-EM structure of CPSF160-WDR33-ZC3H18
Method: single particle / : Kuhn CC, Chand MK, Todesca S, Williams K, Keidel A, Garland W, Jensen TH, Conti E

EMDB-55520:
cryo-EM map of the human mPSF with FIP1
Method: single particle / : Kuhn CC, Chand MK, Todesca S, Williams K, Keidel A, Garland W, Jensen TH, Conti E

EMDB-63614:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Z, Hauser AS, Carlsson J

PDB-9m42:
Structure-based discovery of potent agonists of the orphan receptor GPR139
Method: single particle / : Cabezadevaca I, Trapkov B, Shen L, Pezeshki M, Zhang XH, Liu Zj, Hauser AS, Carlsson J

EMDB-49539:
Raw consensus map of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49540:
Constituent EM map: Focused refinement on TaF/TMD/CTD of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49541:
Constituent EM map: Focused refinement on S2S3 of mouse RyR1 (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49542:
Raw consensus map of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49543:
Constituent EM map: Focused refinement on TaF/TMD/CTD of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49544:
Constituent EM map: Focused refinement on S2S3 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49545:
Raw consensus map of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49546:
Constituent EM map: Focused refinement on TaF/TMD/CTD of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49547:
Constituent EM map: Focused refinement on S2S3 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; open pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49548:
Raw consensus map of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49549:
Constituent EM map: Focused refinement on TaF/TMD/CTD of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49550:
Constituent EM map: Focused refinement on S2S3 of mouse RyR1 with simvastatin (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49551:
Raw consensus map of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-49552:
Constituent EM map: Focused refinement on TaF/TMD/CTD of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-49553:
Constituent EM map: Focused refinement on S2S3 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-72178:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER, Lander GC

PDB-9q33:
Cereblon Ternary Complex with Blimp1 and compound 5
Method: single particle / : Watson ER

EMDB-73147:
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73148:
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73149:
Constituent EM map: Focused refinement on BSol of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73151:
Constituent EM map: Focused refinement on Ry12 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73152:
Constituent EM map: Focused refinement on Ry34 of mouse RyR1 (including auxiliary transmembrane helix TMx; EGTA-only dataset)
Method: single particle / : Weninger G, Marks AR

EMDB-73154:
Constituent EM map: Focused refinement on NTD+SPRY+Calstabin-1 of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

EMDB-73155:
Constituent EM map: Focused refinement on JSol+CSol of mouse RyR1 (Ca2+/CFF/ATP dataset; closed pore)
Method: single particle / : Weninger G, Marks AR

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more