[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 17,236 items for (author: im & d)

EMDB-55110:
Cryo-EM structure of the Arabidopsis thaliana CAT4 transporter in the outward-open apo state (without synthetic nanobody)
Method: single particle / : Kolokouris D, Zeng YC, Newstead S

PDB-9sqh:
Cryo-EM structure of the Arabidopsis thaliana CAT4 transporter in the outward-open apo state (without synthetic nanobody)
Method: single particle / : Kolokouris D, Zeng YC, Newstead S

EMDB-75887:
SARS-CoV-2 Omicron BA.4 RBD in complex with Omi32 Fab and LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

EMDB-75889:
SARS-CoV-2 Omicron BA.4 RBD in complex with Omi32 germline Fab and LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

EMDB-75891:
SARS-CoV-2 Omicron BA.1 RBD in complex with Omi32 germline Fab and LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

EMDB-75892:
Omi32 Fab in complex with LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

EMDB-75893:
Omi32 germline Fab in complex with LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

PDB-11ol:
SARS-CoV-2 Omicron BA.4 RBD in complex with Omi32 Fab and LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

PDB-11oo:
SARS-CoV-2 Omicron BA.4 RBD in complex with Omi32 germline Fab and LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

PDB-11oq:
SARS-CoV-2 Omicron BA.1 RBD in complex with Omi32 germline Fab and LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

PDB-11or:
Omi32 Fab in complex with LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

PDB-11ou:
Omi32 germline Fab in complex with LC-Kappa VHH
Method: single particle / : Kang G, Phillips AM, Catalano C, Scapin G

EMDB-56885:
NorA bound to miniprotein I-23
Method: single particle / : Lamon G, Mishra P, Chazin-Gray A, Baker D, Traaseth NJ

PDB-28vj:
NorA bound to miniprotein I-23
Method: single particle / : Lamon G, Mishra P, Chazin-Gray A, Baker D, Traaseth NJ

EMDB-54651:
Unliganded tetramer of Glycogen phosphorylase from E. coli
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

PDB-9s86:
Structure of glycogen phosphorylase - tetrameric form - from Escherichia coli
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-54650:
Unliganded dimer - bacterial
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-54658:
Complexed dimer - bacterial
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-54663:
Complexed tetramer - bacterial
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

PDB-9s7v:
Structure of glycogen phosphorylase - dimeric form - from Escherichia coli
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

PDB-9s8b:
Structure of glycogen phosphorylase - dimeric form - in complex with HPr from Escherichia coli
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

PDB-9s8k:
Structure of glycogen phosphorylase - tetrameric form - in complex with HPr from Escherichia coli
Method: single particle / : Di Domenico V, Mastrella L, Alcaide-Jimenez A, Villegas-Ruiz JC, D'Angelo C, Cifuente JO, Connell SR, Guerin ME

EMDB-49985:
Focused refinement of PP2Ac repeats 3 and 4 of the CCDC6-PP2Ac complex
Method: single particle / : Hsu PL, Michaelian N, Azumaya C, Coassolo S, Yauch RL

EMDB-49986:
Focused refinement of PP2Ac repeat 4 of the CCDC6-PP2Ac complex
Method: single particle / : Hsu PL, Michaelian N, Azumaya C, Coassolo S, Yauch RL

EMDB-49987:
Focused refinement of PP2Ac repeats 2 and 3 of the CCDC6-PP2Ac complex
Method: single particle / : Hsu PL, Michaelian N, Azumaya C, Coassolo S, Yauch RL

EMDB-49988:
Focused refinement of PP2Ac repeat 3 of the CCDC6-PP2Ac complex
Method: single particle / : Hsu PL, Michaelian N, Azumaya C, Coassolo S, Yauch RL

EMDB-49989:
Focused refinement of PP2Ac repeats 1 and 2 of the CCDC6-PP2Ac complex
Method: single particle / : Hsu PL, Michaelian N, Azumaya C, Coassolo S, Yauch RL

EMDB-49990:
Focused refinement of PP2Ac repeat 2 of the CCDC6-PP2Ac complex
Method: single particle / : Hsu PL, Michaelian N, Azumaya C, Coassolo S, Yauch RL

EMDB-70069:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to FNZ, Global Map
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-70070:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to FNZ- local map
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-64920:
Cryo-EM structure of CARD1 ectodomain
Method: single particle / : Fukuda Y, Ishihama N, Laohavisit A

EMDB-64934:
Cryo-EM structure of a CARD1 ectodomain H197A/H199A/H222A mutant
Method: single particle / : Fukuda Y, Ishihama N, Laohavisit A

EMDB-75897:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 80S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Siems H, Serwas D, Paraan M, Montabana EA, Yu Y

EMDB-75900:
Evaluating the Volta Phase Plate for Improved Tomogram Alignment in Cryo-Electron Tomography: structure of 70S ribosome with VPP (full dataset)
Method: subtomogram averaging / : Hutchings J, Ji D, Ali M, Paraan M, Montabana EA, Yu Y

EMDB-54803:
Structure of Photosystem I from Chlamydomonas reinhardtii at 1.83 A resolution
Method: single particle / : Mahapatra GP, Schuller JM

EMDB-54804:
Structure of Cytochrome C6 bound Photosystem I from Chlamydomonas reinhardtii at 2.07 A resolution
Method: single particle / : Mahapatra GP, Schuller JM

PDB-9se6:
Structure of Photosystem I from Chlamydomonas reinhardtii at 1.83 A resolution
Method: single particle / : Mahapatra GP, Schuller JM

PDB-9se7:
Structure of Cytochrome C6 bound Photosystem I from Chlamydomonas reinhardtii at 2.07 A resolution
Method: single particle / : Mahapatra GP, Schuller JM

EMDB-56582:
XBP1u-stalled RPL4 RNC in complex with NAC (locally refined on 40S body)
Method: single particle / : Predin M, Jang J, Ban N

EMDB-56583:
XBP1u-stalled RPL4 RNC in complex with NAC (locally refined on 40S head)
Method: single particle / : Predin M, Jang J, Ban N

EMDB-68666:
Human 80S ribosome in complex with DHX29
Method: single particle / : Goto-Ito S, Iwasaki W, Ito T

PDB-22tu:
Human 80S ribosome in complex with DHX29
Method: single particle / : Goto-Ito S, Iwasaki W, Ito T

EMDB-70477:
70S global refined map of E.coli 70S ribosome complexed with P-site fMet-tRNAfMet and A-site S-beta(2)hydroxyBocK-tRNAPyl
Method: single particle / : Majumdar C, Cate J

EMDB-70071:
CryoEM structure of mu-opioid receptor - Gi protein complex bound to fluornitrazene (FNZ)
Method: single particle / : Robertson MJ, Skiniotis G

EMDB-75112:
SK3D-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75120:
OX1-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75121:
SK5A-Matured apo state in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75122:
SK5B-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75123:
SK3D-Germline in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

EMDB-75127:
SK5G-Matured in complex with GluN1-GluN2B, full refinement
Method: single particle / : Kleeman SO, Furukawa HF

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more