[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 82 items for (author: hopfner & kp)

EMDB-19870:
Human OGG1 bound to a nucleosome core particle with 8-oxodGuo lesion at SHL6.0

EMDB-19798:
human PLD3 homodimer structure

EMDB-17010:
CryoEM Structure INO80core Hexasome complex Rvb core refinement state1

EMDB-17006:
CryoEM Structure INO80core Hexasome complex composite map state1

EMDB-17007:
CryoEM Structure INO80core Hexasome complex ATPase-DNA refinement state1

EMDB-17008:
CryoEM Structure INO80core Hexasome complex Hexasome refinement state1

EMDB-17012:
CryoEM Structure INO80core Hexasome complex Arp5 Ies6 refinement state1

EMDB-17017:
CryoEM Structure INO80core Hexasome complex Arp5 grappler refinement state1

EMDB-17025:
INO80 core bound to hexasome composite map of state 2

EMDB-17026:
CryoEM Structure INO80core Hexasome complex Rvb core refinement state2

EMDB-17027:
CryoEM Structure INO80core Hexasome complex ATPase-hexasome refinement state 2

EMDB-17028:
CryoEM Structure INO80core Hexasome complex Arp5 Ies6 refinement state2

EMDB-17676:
INO80 core bound to hexasome focused refinement of Arp5 grappler

EMDB-17019:
CryoEM Structure INO80core Hexasome complex overall refinement state1

EMDB-17023:
CryoEM Structure INO80core Hexasome complex ATPase-hexasome refinement state 1

EMDB-17029:
CryoEM Structure INO80core Hexasome complex overall refinement state2

EMDB-17032:
CryoEM Structure INO80 hexasome complex Arp8 module bound to DNA

EMDB-14762:
Mot1:TBP:DNA - pre-hydrolysis state

EMDB-14584:
Mot1(1-1836):TBP:DNA - post-hydrolysis complex dimer

EMDB-14534:
Mot1E1434Q:TBP:DNA - substrate recognition state

EMDB-14554:
Mot1:TBP - product state

EMDB-14562:
Mot1:TBP:DNA - post hydrolysis state

EMDB-14878:
CtMre11-Rad50-Nbs1 complex, long coiled-coils map

EMDB-14879:
Mre11-Rad50-Nbs1 complex (Chaetomium thermophilum) lower coiled-coils

EMDB-14880:
Eukaryotic Mre11-Rad50-Nbs1 complex catalytic head

EMDB-14881:
Chaetomium thermophilum Mre11-Rad50-Nbs1 complex bound to ATPyS (composite structure)

EMDB-15948:
Human Mre11-Nbs1 complex

EMDB-14877:
Chaetomium thermophilum MRN complex (Nbs1)

EMDB-14882:
Chaetomium thermophilum Rad50 zinc-hook tetramer

EMDB-15165:
Structure of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of Chaetomium thermophilum INO80

EMDB-14876:
Cryo-EM map of Chaetomium thermophilum MRN (RBD & bridge)

EMDB-15163:
Cryo-EM reconstruction of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of INO80

EMDB-15164:
Human Ino80 A-module + YY1

EMDB-15177:
Cryo-EM reconstruction of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of S. cerevisiae INO80

EMDB-15179:
Cryo-EM reconstruction of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of S. cerevisiae INO80

EMDB-15180:
Structure of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of Chaetomium thermophilum INO80 on curved DNA

EMDB-15184:
Structure of Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of Chaetomium thermophilum INO80 on straight DNA

EMDB-15186:
Cryo-EM reconstruction of DNA bound Arp4-Ies4-N-actin-Arp8-Ino80HSA subcomplex (A-module) of S. cerevisiae INO80

EMDB-15187:
A-module of Chaetomium thermophilum INO80 bound to curved DNA

EMDB-15188:
Nucleosome bound Chaetomium thermophilum INO80 (ADP-BeF3 state) core complex with Arp5 grappler in parallel conformation

EMDB-15211:
Ino80 core complex with A-module on nucleosome

EMDB-15647:
Nucleosome-bound Ino80 ATPase

EMDB-15688:
CryoEM structure of INO80 core nucleosome complex in closed grappler conformation (ADP-BeFx state)

EMDB-14690:
Human SLFN11 dimer apoenzyme

EMDB-14691:
Human SLFN11 E209A dimer

EMDB-14692:
Human SLFN11 dimer bound to ssDNA

EMDB-14693:
SLFN11 E209A monomer

EMDB-14695:
SLFN11 dimer bound to tRNA

EMDB-14391:
Endonuclease state of the E. coli Mre11-Rad50 (SbcCD) head complex bound to ADP and dsDNA

EMDB-14392:
Composite map of two E. coli Mre11-Rad50 (SbcCD) complexes bound to Ku70/80 blocked dsDNA in endonuclease state

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more