[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 368 items for (author: he & yj)

EMDB-65070:
cryoEM structure of retron-Eco7 complex (form II)
Method: single particle / : Dai ZK, Wang YJ, Guan ZY, Zou TT

EMDB-65064:
cryoEM structure of retron-Eco7 complex
Method: single particle / : Dai ZK, Wang YJ, Guan ZY, Zou TT

EMDB-61426:
The complex structure of 0086-0043 and NET determined with Cryo-EM.
Method: single particle / : Jia YJ, Gao B, Tan JX, Yan CY, Zhang W, Lan YY

EMDB-54169:
Cryo-EM structure of LptDEM complex containing Shigella flexneri LptE and endogenous E. coli LptD and LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54170:
Cryo-EM structure of Shigella flexneri LptDE in complex with RTP45 superinfection exclusion protein from RTP bacteriophage and endogenous LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54171:
Cryo-EM structure of the open state of Shigella flexneri LptDE bound by the RBP of Oekolampad phage
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54173:
Cryo-EM structure of Shigella flexneri LptDE dimer: closed-state unbound and open-state bound by Oekolampad phage RBP
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-54175:
Cryo-EM structure of Shigella flexneri LptDE bound by phage RBP reveals N-terminal strand insertion into lateral gate
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rpr:
Cryo-EM structure of LptDEM complex containing Shigella flexneri LptE and endogenous E. coli LptD and LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rps:
Cryo-EM structure of Shigella flexneri LptDE in complex with RTP45 superinfection exclusion protein from RTP bacteriophage and endogenous LptM
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rpt:
Cryo-EM structure of the open state of Shigella flexneri LptDE bound by the RBP of Oekolampad phage
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rpw:
Cryo-EM structure of Shigella flexneri LptDE dimer: closed-state unbound and open-state bound by Oekolampad phage RBP
Method: single particle / : Dunbar E, Basle A, van den Berg B

PDB-9rqi:
Cryo-EM structure of Shigella flexneri LptDE bound by phage RBP reveals N-terminal strand insertion into lateral gate
Method: single particle / : Dunbar E, Basle A, van den Berg B

EMDB-65052:
cryoEM structure of ptuA-ptuB complex in Retron-Eco7 anti-phage system
Method: single particle / : Dai ZK, Wang YJ, Guan ZY, Zou TT

EMDB-49486:
MARV GP in complex with MARV16 Fab
Method: single particle / : Addetia A, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-71899:
Structure of V30V4 in complex with SARS-CoV-2 spike
Method: single particle / : Wang YJ, Kibria G, Wesemann D, Chen B

EMDB-71900:
The local refinement map of Structure of V30V4 in complex with SARS-CoV-2 spike
Method: single particle / : Wang YJ, Kibria G, Wesemann D, Chen B

EMDB-62504:
Cryo-EM structure of CsKCS6-CsCER2 complex
Method: single particle / : Wang Y, Guan ZY, Zhu F, Chen YJ, Yin P

EMDB-63076:
Cryo-EM structure of CsKCS6-CsCER2 like1 complex
Method: single particle / : Wang Y, Guan ZY, Zhu F, Chen YJ, Yin P

EMDB-52749:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 1)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52750:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 2)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52751:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 3)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52752:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 4)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52753:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 5)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52754:
Cryo-EM structure of Shigella flexneri LptDE in complex with a Bicyclic Peptide binder (Compound 12)
Method: single particle / : Allyjaun S, Dunbar E, Hardwick SW, Chirgadze DY, Hubbard J, van den Berg B, Newman H

EMDB-52755:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 13)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

EMDB-52896:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 16)
Method: single particle / : Allyjaun S, Newman H, Chirgadze DY, Hardwick SW, Hubbard J, van den Berg B, Dunbar E

PDB-9i92:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 1)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i93:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 2)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i94:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 3)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i95:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 4)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i96:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 5)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9i97:
Cryo-EM structure of Shigella flexneri LptDE in complex with a Bicyclic Peptide binder (Compound 12)
Method: single particle / : Allyjaun S, Dunbar E, Hardwick SW, Chirgadze DY, Hubbard J, van den Berg B, Newman H

PDB-9i98:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 13)
Method: single particle / : Allyjaun S, Newman H, Dunbar E, Hardwick SW, Chirgadze DY, van den Berg B, Hubbard J

PDB-9q8n:
Cryo-EM structure of Shigella flexneri LptDE bound by a Bicyclic peptide molecule (Compound 16)
Method: single particle / : Allyjaun S, Newman H, Chirgadze DY, Hardwick SW, Hubbard J, van den Berg B, Dunbar E

EMDB-39670:
Structure of a murine monoclonal antibody Fab5 targeting Epstein-Barr virus gB
Method: single particle / : Fang XY, Sun C, Zeng MS, Liu Z

EMDB-63214:
cryo-EM structure of retron Eco2
Method: single particle / : Wang YJ, Wang C, Guan ZY, Zou TT

EMDB-49092:
Structure of the Rattus norvegicus ACE2 receptor bound HsItaly2011 RBD complex
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-49093:
Eptesicus fuscus ACE2 peptidase domain bound to VsCoV-a7 RBD complex
Method: single particle / : Park YJ, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-49874:
CryoET tomogram of hESC-derived retinal ganglion cell treated with calcification media
Method: electron tomography / : Hou C, Wu GH, Patel HR, Liao YJ, Chiu W

EMDB-49875:
CryoET tomogram of hESC-derived retinal ganglion cell treated with potassium phosphate
Method: electron tomography / : Hou C, Wu GH, Patel HR, Liao YJ, Chiu W

EMDB-61179:
V517F Mutation in USP7 Causes USP7 Inhibitor Resistance by Increasing Steric Hindrance of Inhibitor-Enzyme Binding
Method: single particle / : Yu XK, Fan FY

EMDB-70961:
Cryo-EM structure of S. Mansoni p97 bound to CB-5083
Method: single particle / : Stephens DR, Han Y, Chen Z, Collins JJ, Fung HYJ

EMDB-71062:
Cryo-EM structure of apo S. Mansoni p97
Method: single particle / : Stephens DR, Han Y, Chen Z, Collins JJ, Fung HYJ

EMDB-71063:
Cryo-EM structure of S. Mansoni p97 bound to ATPgS
Method: single particle / : Stephens DR, Han Y, Chen Z, Collins JJ, Fung HYJ

EMDB-71064:
Cryo-EM structure of S. Mansoni p97 bound to compound 739
Method: single particle / : Stephens DR, Han Y, Chen Z, Liang J, Ready J, Collins JJ, Fung HYJ

EMDB-71066:
Cryo-EM structure of S. Mansoni p97 bound to compound 804
Method: single particle / : Stephens DR, Han Y, Chen Z, Liang J, Ready J, Collins JJ, Fung HYJ

EMDB-60835:
Structure of rat TRPV1 in complex with PSFL426-S5
Method: single particle / : Chen X, Yu Y

EMDB-49635:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosomal subunit (local refinement of the 40S body)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-49636:
SARS-CoV-2 nsp1 bound to the Rhinolophus lepidus 40S ribosome (local refinement of the 40S head)
Method: single particle / : Gen R, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more