[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 76 items for (author: hariharan & c)

EMDB-44747:
A broadly-neutralizing antibody against Ebolavirus glycoprotein that can potentiate the breadth and neutralization potency of other anti-glycoprotein antibodies
Method: single particle / : Donnellan FR, Rayaprolu V, Rijal P, O'Dowd V, Parvate A, Callaway H, Hariharan C, Parekh D, Hui S, Shaffer K, Hastie K, Shimanski L, Muller-Krauter H, Stecker T, Balaram A, Halfmann P, Saphire EO, Lightwood DJ, Townsend AR, Draper SJ

PDB-9bop:
A broadly-neutralizing antibody against Ebolavirus glycoprotein that can potentiate the breadth and neutralization potency of other anti-glycoprotein antibodies
Method: single particle / : Donnellan FR, Rayaprolu V, Rijal P, O'Dowd V, Parvate A, Callaway H, Hariharan C, Parekh D, Hui S, Shaffer K, Hastie K, Shimanski L, Muller-Krauter H, Stecker T, Balaram A, Halfmann P, Saphire EO, Lightwood DJ, Townsend AR, Draper SJ

EMDB-48351:
Pre-fusion HERV-K Envelope Protein Trimer Ectodomain in complex with Kenv-6 Fab
Method: single particle / : Shek J, Sun C, Hastie K, Saphire EO

EMDB-48374:
Post-fusion HERV-K Envelope Protein in complex with Kenv-4 Fab
Method: single particle / : Sun C, Shek J, Hastie K, Saphire EO

EMDB-70098:
Pre-fusion Stabilized HERV-K Envelope Trimer Ectodomain
Method: single particle / : Shek J, Sun C, Hastie K, Saphire EO

PDB-9mla:
Pre-fusion HERV-K Envelope Protein Trimer Ectodomain in complex with Kenv-6 Fab
Method: single particle / : Shek J, Sun C, Hastie K, Saphire EO

PDB-9mlk:
Post-fusion HERV-K Envelope Protein in complex with Kenv-4 Fab
Method: single particle / : Sun C, Shek J, Hastie K, Saphire EO

PDB-9o4f:
Pre-fusion Stabilized HERV-K Envelope Trimer Ectodomain
Method: single particle / : Shek J, Sun C, Hastie K, Saphire EO

EMDB-45157:
SARS-CoV-2 Nucleocapsid Dimerization Domain bound to Fab-NP1E9 and Fab-NP3B4
Method: single particle / : Landeras-Bueno S, Hariharan C, Diaz Avalos R, Ollmann Saphire E

EMDB-45158:
SARS-CoV-2 Nucleocapsid dimer complexed to 24 bp RNA
Method: single particle / : Landeras-Bueno S, Ollmann-Saphire E

PDB-9c2h:
SARS-CoV-2 Nucleocapsid Dimerization Domain bound to Fab-NP1E9 and Fab-NP3B4
Method: single particle / : Landeras-Bueno S, Hariharan C, Diaz Avalos R, Ollmann Saphire E

EMDB-45833:
KZ52 Fab fragment bound to Ebola GP, subtomogram average from a tight mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45834:
KZ52 Fab fragment bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45835:
3A6 Fab fragment bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45836:
3A6 and KZ52 Fab fragments bound to Ebola GP, subtomogram average from a tight mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-45837:
3A6 and KZ52 Fab fragments bound to Ebola GP, subtomogram average from a cylinder mask
Method: subtomogram averaging / : Ke Z, Saphire EO, Briggs JAG

EMDB-42527:
Pre-fusion Measles virus fusion protein complexed with Fab 77
Method: single particle / : Zyla D, Saphire EO

EMDB-42539:
Structure of the Measles virus Fusion protein in the post-fusion conformation
Method: single particle / : Zyla D, Saphire EO

EMDB-42593:
Structure of the Measles virus Fusion protein in the pre-fusion conformation
Method: single particle / : Zyla D, Saphire EO

EMDB-42595:
Structure of the Measles virus Fusion protein in the pre-fusion conformation with bound [FIP-HRC]2-PEG11
Method: single particle / : Zyla D, Saphire EO

EMDB-43827:
Fab 77-stabilized MeV F ectodomain fragment
Method: single particle / : Zyla D, Saphire EO

PDB-8ut2:
Pre-fusion Measles virus fusion protein complexed with Fab 77
Method: single particle / : Zyla D, Saphire EO

PDB-8utf:
Structure of the Measles virus Fusion protein in the post-fusion conformation
Method: single particle / : Zyla D, Saphire EO

PDB-8uup:
Structure of the Measles virus Fusion protein in the pre-fusion conformation
Method: single particle / : Zyla D, Saphire EO

PDB-8uuq:
Structure of the Measles virus Fusion protein in the pre-fusion conformation with bound [FIP-HRC]2-PEG11
Method: single particle / : Zyla D, Saphire EO

PDB-9at8:
Fab 77-stabilized MeV F ectodomain fragment
Method: single particle / : Zyla D, Saphire EO

EMDB-41062:
CryoEM structure of an inward-facing MelBSt at a Na(+)-bound and sugar low-affinity conformation
Method: single particle / : Guan L

PDB-8t60:
CryoEM structure of an inward-facing MelBSt at a Na(+)-bound and sugar low-affinity conformation
Method: single particle / : Guan L

EMDB-27637:
Structure of EBOV GP lacking the mucin-like domain with 2.1.1D5 scFv and 6D6 scFv bound
Method: single particle / : Yu X, Saphire EO

EMDB-27638:
Structure of EBOV GP lacking the mucin-like domain with 9.20.1A2 Fab and 6D6 scFv bound
Method: single particle / : Yu X, Saphire EO

PDB-8dpl:
Structure of EBOV GP lacking the mucin-like domain with 2.1.1D5 scFv and 6D6 scFv bound
Method: single particle / : Yu X, Saphire EO

PDB-8dpm:
Structure of EBOV GP lacking the mucin-like domain with 9.20.1A2 Fab and 6D6 scFv bound
Method: single particle / : Yu X, Saphire EO

EMDB-28756:
Structure of SARS-CoV-2 Omicron BA.1 spike in complex with antibody Fab 1C3
Method: single particle / : Yu X, Zyla D, Hastie KM, Saphire EO

EMDB-28757:
Structure of SARS-CoV-2 spike with antibody Fabs 2A10 and 1H2 (Local refinement of the RBD and Fabs 1H2 and 2A10)
Method: single particle / : Yu X, Zyla D, Hastie KM, Saphire EO

EMDB-28763:
Negative stain EM map of SARS-CoV-2 D614G Spike in complex with 2A10 IgG
Method: single particle / : Yu X, Hariharan C, Hastie KM, Saphire EO

EMDB-28764:
Negative stain EM map of SARS-CoV-2 D614G Spike in complex with 4H4 IgG
Method: single particle / : Yu X, Hariharan C, Hastie KM, Saphire EO

EMDB-28765:
Negative stain EM map of SARS-CoV-2 D614G Spike in complex with 1C3 IgG
Method: single particle / : Yu X, Hariharan C, Hastie KM, Saphire EO

EMDB-28769:
Negative stain EM map of SARS-CoV-2 Omicron BA.1 Spike in complex with 1C3 IgG
Method: single particle / : Yu X, Hariharan C, Hastie KM, Saphire EO

EMDB-28770:
Negative stain EM map of SARS-CoV-2 D614G Spike in complex with 2G3 IgG
Method: single particle / : Yu X, Hariharan C, Hastie KM, Saphire EO

EMDB-28771:
Negative stain EM map of SARS-CoV-2 D614G Spike in complex with 2E6 IgG
Method: single particle / : Yu X, Hariharan C, Hastie KM, Saphire EO

EMDB-28772:
Negative stain EM map of SARS-CoV-2 D614G Spike in complex with 1H2 Fab
Method: single particle / : Yu X, Hariharan C, Hastie KM, Saphire EO

EMDB-28773:
Negative stain EM map of SARS-CoV-2 D614G Spike in complex with 1G8 IgG
Method: single particle / : Yu X, Hariharan C, Hastie KM, Saphire EO

PDB-8f0g:
Structure of SARS-CoV-2 Omicron BA.1 spike in complex with antibody Fab 1C3
Method: single particle / : Yu X, Zyla D, Hastie KM, Saphire EO

PDB-8f0h:
Structure of SARS-CoV-2 spike with antibody Fabs 2A10 and 1H2 (Local refinement of the RBD and Fabs 1H2 and 2A10)
Method: single particle / : Yu X, Zyla D, Hastie KM, Saphire EO

EMDB-26005:
Structure of the Inmazeb cocktail and resistance to escape against Ebola virus
Method: single particle / : Rayaprolu V, Fulton B

PDB-7tn9:
Structure of the Inmazeb cocktail and resistance to escape against Ebola virus
Method: single particle / : Rayaprolu V, Fulton B, Rafique A, Arturo E, Williams D, Hariharan C, Callaway H, Parvate A, Schendel SL, Parekh D, Hui S, Shaffer K, Pascal KE, Wloga E, Giordano S, Copin R, Franklin M, Boytz RM, Donahue C, Davey R, Baum A, Kyratsous CA, Saphire EO

EMDB-24346:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-80 IgG
Method: single particle / : Saphire EO, Li H

EMDB-24348:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-081 Fab
Method: single particle / : Saphire EO, Li H

EMDB-24349:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-091 IgG
Method: single particle / : Saphire EO, Li H

EMDB-24350:
Negative stain EM map of SARS-CoV-2 Spike in complex with CoVIC-094 VHH-Fc
Method: single particle / : Saphire EO, Li H

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more