[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 41 items for (author: gragera & m)

EMDB-54546:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 3IsdH(alpha2beta):Hbtet complex
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54563:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 4 right tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54565:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 0 left tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54566:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 0 right tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54567:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 4 left tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54585:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 3IsdH(alphabeta2):Hbtet complex
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54591:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH(alpha2):Hbtet complex - 3DVA component 0 right tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54613:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH(alpha2):Hbtet complex - 3DVA component 0 left tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54618:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH(alpha*beta):Hbdim complex - 3DVA component 0 right tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54619:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH(alpha*beta):Hbdim complex - 3DVA component 0 left tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54620:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH(alpha*beta):Hbdim complex - 3DVA component 1 left tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-54621:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH(alpha*beta):Hbdim complex - 3DVA component 1 right tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

PDB-9s3p:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 3IsdH(alpha2beta):Hbtet complex
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

PDB-9s4f:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 4 right tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

PDB-9s4i:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 0 left tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

PDB-9s4j:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 0 right tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

PDB-9s4k:
Human carboxyhemoglobin bound to Staphylococcus aureus IsdH-N2N3 - 2IsdH:Hbdim complex - 3DVA component 4 left tail
Method: single particle / : Buoli Comani V, De Bei O, Gragera M, Luisi BF, Bettati S

EMDB-52187:
Amyloid DNA Bridging by Hfq C-terminal region
Method: helical / : Gragera M, Arluison V

EMDB-52764:
Structure of the Mycobacterium tuberculosis ClpC1P1P2 complex bound to the activator Bz-LL - focused refinement ClpC1
Method: single particle / : Semchonok DA, Weinhaeupl K, Gragera M, Arranz R, Bueno Carrasco MT, Fraga H

EMDB-52840:
Structure of the Mycobacterium Tuberculosis ClpC1P1P2 complex bound to the activator Bz-Leu-Leu
Method: single particle / : Weinhaeupl K, Semchonok D, Gragera M, Arranz R, Bueno Carrasco MT, Fraga H

PDB-9if4:
Structure of the Mycobacterium Tuberculosis ClpC1P1P2 complex bound to the activator Bz-Leu-Leu
Method: single particle / : Weinhaeupl K, Semchonok D, Gragera M, Arranz R, Bueno Carrasco MT, Fraga H

EMDB-52766:
Structure of the Mycobacterium tuberculosis ClpC1P1P2 complex bound to the activator Bz-LL - focused map ClpP1P2
Method: single particle / : Semchonok D, Weinhaeupl K, Gragera M, Arranz R, Bueno Carrasco MT, Fraga H

EMDB-52765:
Structure of the Mycobacterium tuberculosis ClpC1P1P2 complex bound to the activator Bz-LL - consensus map
Method: single particle / : Semchonok D, Weinhaeupl K, Gragera M, Arranz R, Bueno Carrasco MT, Fraga H

EMDB-52999:
HER2/ErbB2 extracellular domain (ECD) from a near full-length construct solubilized in amphipols.
Method: single particle / : Gragera M, Buschiazzo A, Vacca S

PDB-9qbh:
HER2/ErbB2 extracellular domain (ECD) from a near full-length construct solubilized in amphipols.
Method: single particle / : Gragera M, Buschiazzo A, Vacca S

EMDB-52997:
HER2/ErbB2 extracellular domain (ECD) in compact conformation in complex with trastuzumab (TZB) antibody
Method: single particle / : Gragera M, Buschiazzo A, Vacca S

EMDB-52998:
HER2/ErbB2 extracellular domain (ECD) in extended conformation in complex with trastuzumab (TZB) antibody
Method: single particle / : Gragera M, Buschiazzo A, Vacca S

PDB-9qbf:
HER2/ErbB2 extracellular domain (ECD) in compact conformation in complex with trastuzumab (TZB) antibody
Method: single particle / : Gragera M, Buschiazzo A, Vacca S

PDB-9qbg:
HER2/ErbB2 extracellular domain (ECD) in extended conformation in complex with trastuzumab (TZB) antibody
Method: single particle / : Gragera M, Buschiazzo A, Vacca S

EMDB-41586:
Cryo-EM structure of N-glycosylated Pomacea canaliculata hemocyanin
Method: single particle / : Brola TR, Chiumiento IR, Gragera M, Carazo JM, Heras H, Dreon MS, Otero LH

PDB-8trz:
Cryo-EM structure of N-glycosylated Pomacea canaliculata hemocyanin
Method: single particle / : Brola TR, Chiumiento IR, Gragera M, Carazo JM, Heras H, Dreon MS, Otero LH

EMDB-16862:
Molecular Mechanism of trypanosomal AQP2
Method: single particle / : Weyand SN, Matusevicius M, Yamashita K

EMDB-16863:
Molecular Mechanism of trypanosomal AQP2
Method: single particle / : Weyand SN, Matusevicius M, Yamashita K

EMDB-16864:
Molecular Mechanism of trypanosomal AQP2
Method: single particle / : Weyand SN, Matusevicius M, Yamashita K

EMDB-15243:
Mycobacterium tuberculosis ClpC1 hexamer structure bound to the natural product antibiotic ecumicin (class 2)
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

EMDB-15240:
Mycobacterium tuberculosis ClpC1 hexamer structure
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

EMDB-15241:
Mycobacterium tuberculosis ClpC1 hexamer structure bound to the natural product antibiotic Cyclomarin
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

EMDB-15242:
Mycobacterium tuberculosis ClpC1 hexamer structure bound to the natural product antibiotic Ecumycin (class 1)
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

PDB-8a8u:
Mycobacterium tuberculosis ClpC1 hexamer structure
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

PDB-8a8v:
Mycobacterium tuberculosis ClpC1 hexamer structure bound to the natural product antibiotic Cyclomarin
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

PDB-8a8w:
Mycobacterium tuberculosis ClpC1 hexamer structure bound to the natural product antibiotic Ecumycin (class 1)
Method: single particle / : Felix J, Fraga H, Gragera M, Bueno T, Weinhaeupl K

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more