[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 147 items for (author: graf & b)

EMDB-18977:
Cryo-EM structure of the human TREX-2 complex
Method: single particle / : Hohmann U, Graf M, Plaschka C

EMDB-18978:
Cryo-EM structure of the human UAP56 - TREX-2 complex
Method: single particle / : Hohmann U, Graf M, Plaschka C

EMDB-18981:
Structure of the human UAP56 RecA1 RecA2 - TREX-2 complex
Method: single particle / : Hohmann U, Graf M, Plaschka C

PDB-9q8j:
CryoEM structure of modified Turnip Yellows Virus devoid of minor capsid protein readthrough domain
Method: single particle / : Trapani S, Lai Kee Him J, Hoh F, Brault V, Bron P

EMDB-63513:
Alpha SARS-CoV-2 spike protein in complex with REGN10987 Fab homologue.
Method: single particle / : Kocharovskaya MV, Pichkur EB, Shenkarev ZO, Lyukmanova EN

EMDB-63514:
Alpha SARS-CoV-2 spike protein RBD-down in complex with REGN10987 Fab homologue (local refinement)
Method: single particle / : Kocharovskaya MV, Pichkur EB, Shenkarev ZO, Lyukmanova EN

PDB-9lyo:
Alpha SARS-CoV-2 spike protein in complex with REGN10987 Fab homologue.
Method: single particle / : Kocharovskaya MV, Pichkur EB, Shenkarev ZO, Lyukmanova EN

PDB-9lyp:
Alpha SARS-CoV-2 spike protein RBD-down in complex with REGN10987 Fab homologue (local refinement)
Method: single particle / : Kocharovskaya MV, Pichkur EB, Shenkarev ZO, Lyukmanova EN

EMDB-43712:
Human EBP complexed with compound 1
Method: single particle / : Sun D, Masureel M

EMDB-43713:
Human EBP complexed with compound 3a
Method: single particle / : Sun D, Masureel M

PDB-8w0r:
Human EBP complexed with compound 1
Method: single particle / : Sun D, Masureel M

PDB-8w0s:
Human EBP complexed with compound 3a
Method: single particle / : Sun D, Masureel M

PDB-9fhp:
CryoEM structure of wild-type Turnip Yellows Virus
Method: single particle / : Trapani S, Lai Kee Him J, Hoh F, Brault V, Bron P

EMDB-17839:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosreductase domain (FASamn sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-17840:
Cryo-EM structure of the yeast fatty acid synthase at 1.9 angstrom resolution
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-17842:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosynthase domain (FASamn sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-17843:
Asymmetric unit of the yeast fatty acid synthase with ACP at the enoyl reductase domain (FASam sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-17846:
Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the enoyl reductase domain (FASam sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-17847:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosynthase domain (FASam sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-17848:
Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the ketosynthase domain (FASam sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-17851:
Asymmetric unit of the yeast fatty acid synthase in non-rotated state with ACP at the acetyl transferase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-17852:
Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the acetyl transferase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-17853:
Asymmetric unit of the yeast fatty acid synthase in the semi rotated state with ACP at the acetyl transferase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-17854:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosynthase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-17855:
Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the ketosynthase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-17856:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the malonyl/palmitoyl transferase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-17859:
Asymmetric unit of the yeast fatty acid synthase in rotated state with ACP at the acetyl transferase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8prv:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosreductase domain (FASamn sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8prw:
Cryo-EM structure of the yeast fatty acid synthase at 1.9 angstrom resolution
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8ps1:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosynthase domain (FASamn sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8ps2:
Asymmetric unit of the yeast fatty acid synthase with ACP at the enoyl reductase domain (FASam sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8ps8:
Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the enoyl reductase domain (FASam sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8ps9:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosynthase domain (FASam sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8psa:
Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the ketosynthase domain (FASam sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8psf:
Asymmetric unit of the yeast fatty acid synthase in non-rotated state with ACP at the acetyl transferase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8psg:
Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the acetyl transferase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8psj:
Asymmetric unit of the yeast fatty acid synthase in the semi rotated state with ACP at the acetyl transferase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8psk:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the ketosynthase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8psl:
Asymmetric unit of the yeast fatty acid synthase in the semi non-rotated state with ACP at the ketosynthase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8psm:
Asymmetric unit of the yeast fatty acid synthase in the non-rotated state with ACP at the malonyl/palmitoyl transferase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

PDB-8psp:
Asymmetric unit of the yeast fatty acid synthase in rotated state with ACP at the acetyl transferase domain (FASx sample)
Method: single particle / : Singh K, Bunzel G, Graf B, Yip KM, Stark H, Chari A

EMDB-28776:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-1305
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-28777:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the acylsulfonamide inhibitor GDC-0310
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-28778:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the arylsulfonamide inhibitor GNE-3565
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-28779:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-9296
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

PDB-8f0p:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-1305
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

PDB-8f0q:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the acylsulfonamide inhibitor GDC-0310
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

PDB-8f0r:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the arylsulfonamide inhibitor GNE-3565
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

PDB-8f0s:
Structure of VSD4-NaV1.7-NaVPas channel chimera bound to the hybrid inhibitor GNE-9296
Method: single particle / : Kschonsak M, Jao CC, Arthur CP, Rohou AL, Bergeron P, Ortwine D, McKerall SJ, Hackos DH, Deng L, Chen J, Sutherlin D, Dragovich PS, Volgraf M, Wright MR, Payandeh J, Ciferri C, Tellis JC

EMDB-15905:
Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
Method: single particle / : Koller TO, Graf M, Wilson DN

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more