[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 94 items for (author: goto & sh)

EMDB-61934:
Hexameric oval ring-like complex of the Borna disease virus 1 nucleoprotein (mutant Lys164Ala)
Method: single particle / : Goto SH, Sugita Y, Hirai Y, Horie M

EMDB-67470:
Tetrameric complex of the Borna disease virus 1 nucleoprotein (mutant Arg341Ala)
Method: single particle / : Sugita Y, Goto SH, Hirai Y, Horie M

EMDB-67471:
Asymmetric tetrameric complex of the Borna disease virus 1 nucleoprotein (mutant Arg341Ala)
Method: single particle / : Sugita Y, Goto SH, Hirai Y, Horie M

EMDB-67472:
Tetrameric complexes of the Borna disease virus 1 nucleoprotein (mutant Arg341Ala) in an antiparallel configuration
Method: single particle / : Sugita Y, Goto SH, Hirai Y, Horie M

EMDB-67473:
Hexameric complex of the Borna disease virus 1 nucleoprotein bound to RNA (mutant Arg341Ala)
Method: single particle / : Sugita Y, Goto SH, Hirai Y, Horie M

EMDB-67474:
Heptameric complex of the Borna disease virus 1 nucleoprotein bound to RNA (mutant Arg341Ala)
Method: single particle / : Sugita Y, Goto SH, Hirai Y, Horie M

EMDB-61933:
Hexameric flat ring-like complex of the Borna disease virus 1 nucleoprotein (mutant Lys164Ala)
Method: single particle / : Goto SH, Sugita Y, Hirai Y, Horie M

EMDB-61937:
Triangular hexameric complex of the Borna disease virus 1 nucleoprotein (mutant Lys164Ala)
Method: single particle / : Goto SH, Sugita Y, Hirai Y, Horie M

EMDB-61938:
Tetrameric complexes of the Borna disease virus 1 nucleoprotein (mutant Lys164Ala) in an antiparallel configuration
Method: single particle / : Goto SH, Sugita Y, Hirai Y, Horie M

EMDB-61936:
S-shaped octameric complex of the Borna disease virus 1 nucleoprotein (mutant Lys164Ala)
Method: single particle / : Goto SH, Sugita Y, Hirai Y, Horie M

EMDB-61931:
Hexameric ring-like complex of the Borna disease virus 1 nucleoprotein (mutant Lys164Ala)
Method: single particle / : Goto SH, Sugita Y, Hirai Y, Horie M

EMDB-61935:
Heptameric flat ring-like complex of the Borna disease virus 1 nucleoprotein (mutant Lys164Ala)
Method: single particle / : Goto SH, Sugita Y, Hirai Y, Horie M

EMDB-61929:
Tetrameric complex of the Borna disease virus 1 nucleoprotein (mutant Lys164Ala)
Method: single particle / : Goto SH, Sugita Y, Hirai Y, Horie M

EMDB-61930:
Pentameric complex of Borna disease virus 1 nucleoprotein (mutant Lys164Ala)
Method: single particle / : Goto SH, Sugita Y, Hirai Y, Horie M

EMDB-61932:
Heptameric ring-like complex of the Borna disease virus 1 nucleoprotein (mutant Lys164Ala)
Method: single particle / : Goto SH, Sugita Y, Hirai Y, Horie M

EMDB-65631:
Subtomogram average of MJ1HA S-layer
Method: subtomogram averaging / : Goto-Ito S, Yamagata A, Lee Y, Ehara H, Ito T

EMDB-65632:
Subtomogram average of MJ1 attachment organelle
Method: subtomogram averaging / : Goto-Ito S, Yamagata A, Lee Y, Ehara H, Ito T

EMDB-61843:
Yeast Mitochondrial PORIN complex
Method: single particle / : Takeda H, Endo T, Kikkawa M, Tsutsumi A

PDB-9jvq:
Yeast Mitochondrial PORIN complex
Method: single particle / : Takeda H, Endo T, Kikkawa M, Tsutsumi A

EMDB-37121:
Structure of nucleosome complexed with one DEK molecule
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-37149:
Structure of H1.2 bound to the nucleosome
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

PDB-8kd1:
Structure of nucleosome complexed with one DEK molecule
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

PDB-8ke0:
Structure of H1.2 bound to the nucleosome
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-37115:
Structure of nucleosome complexed with two DEK molecules
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-38443:
193 bp Widom601L nucleosome (closed)
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-38444:
193 bp Widom601L nucleosome (middle)
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-38445:
193 bp Widom601L nucleosome (open)
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

PDB-8kcy:
Structure of nucleosome complexed with two DEK molecules
Method: single particle / : Kujirai T, Echigoya K, Takizawa Y, Kurumizaka H

EMDB-61058:
Paused elongation complex of mammalian RNA polymerase II with nucleosome (PEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

EMDB-61059:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC1-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

EMDB-61060:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

PDB-9j0n:
Paused elongation complex of mammalian RNA polymerase II with nucleosome (PEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

PDB-9j0o:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC1-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

PDB-9j0p:
Arrested elongation complex of mammalian RNA polymerase II with nucleosome (AEC2-nuc)
Method: single particle / : Naganuma M, Kujirai T, Ehara H, Uejima T, Ito T, Goto M, Aoki M, Henmi M, Miyamoto-Kohno S, Shirouzu M, Kurumizaka H, Sekine S

EMDB-37440:
Cryo-EM structure of the inhibitor-bound Vo complex from Enterococcus hirae
Method: single particle / : Suzuki K, Mikuriya S, Adachi N, Kawasaki M, Senda T, Moriya T, Murata T

PDB-8wci:
Cryo-EM structure of the inhibitor-bound Vo complex from Enterococcus hirae
Method: single particle / : Suzuki K, Mikuriya S, Adachi N, Kawasaki M, Senda T, Moriya T, Murata T

EMDB-39211:
Cryo EM structure of Komagataella phaffii Rat1-Rai1-Rtt103 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

EMDB-39221:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

EMDB-39226:
Cryo EM structure of Komagataella phaffii RNAPII-Rat1-Rai1 pre-termination complex
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

EMDB-39227:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex bound within the RNAPII cleft
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

PDB-8yf5:
Cryo EM structure of Komagataella phaffii Rat1-Rai1-Rtt103 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

PDB-8yfe:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex
Method: single particle / : Yanagisawa T, Murayama Y, Ehara H, Sekine SI

PDB-8yfq:
Cryo EM structure of Komagataella phaffii RNAPII-Rat1-Rai1 pre-termination complex
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

PDB-8yfr:
Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex bound within the RNAPII cleft
Method: single particle / : Murayama Y, Yanagisawa T, Ehara H, Sekine S

EMDB-61088:
Cryo-electron tomography of optogenetically-induced lamellipodia
Method: electron tomography / : Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takazaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T

EMDB-61091:
Cryo-electron tomography of optogenetically-induced lamellipodia
Method: electron tomography / : Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takazaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T

EMDB-61092:
Cryo-electron tomography of optogenetically-induced lamellipodia
Method: electron tomography / : Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takazaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T

EMDB-61093:
Cryo-electron tomography of optogenetically-induced lamellipodia
Method: electron tomography / : Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takazaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more