[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 79 items for (author: gong & hr)

EMDB-49874:
CryoET tomogram of hESC-derived retinal ganglion cell treated with calcification media
Method: electron tomography / : Hou C, Wu GH, Patel HR, Liao YJ, Chiu W

EMDB-49875:
CryoET tomogram of hESC-derived retinal ganglion cell treated with potassium phosphate
Method: electron tomography / : Hou C, Wu GH, Patel HR, Liao YJ, Chiu W

EMDB-39688:
BA.2.86 RBD protein in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

EMDB-39689:
Structure of BA.2.86 spike protein in complex with ACE2.
Method: single particle / : Wang YJ, Zang X, Sun L

EMDB-39690:
Structure of JN.1 RBD protein in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

EMDB-39691:
The JN.1 spike protein (S) in complex with ACE2.
Method: single particle / : Wang YJ, Zhang X, Sun L

EMDB-43645:
Cryo-EM structure of human core Rab3GAP1/2 complex
Method: single particle / : Nguyen KM, Yip CK

EMDB-43655:
Cryo-EM structure of human core Rab3GAP1/2 complex, local refinement
Method: single particle / : Nguyen KM, Yip CK

EMDB-36730:
SARS-CoV-2 Spike RBD (dimer) in complex with two 2S-1244 nanobodies
Method: single particle / : Yang Y, Zhang CH

EMDB-36735:
Dimer of SARS-CoV-2 BA.2 spike and IBT-CoV144(C3 symmetry)
Method: single particle / : Yang Y, Zhang CH

EMDB-36740:
Dimer of SARS-CoV-2 BA.2 spike and IBT-CoV144(C1 symmetry)
Method: single particle / : Yang Y, Zhang CH

PDB-8jys:
SARS-CoV-2 Spike RBD (dimer) in complex with two 2S-1244 nanobodies
Method: single particle / : Yang Y, Zhang CH

EMDB-29645:
Cryo-EM structure of an orphan GPCR-Gi protein signaling complex
Method: single particle / : Zhang X, Wang YJ, Li X, Liu GB, Gong WM, Zhang C

PDB-8g05:
Cryo-EM structure of an orphan GPCR-Gi protein signaling complex
Method: single particle / : Zhang X, Wang YJ, Li X, Liu GB, Gong WM, Zhang C

EMDB-33864:
Cryo-EM structure of C6-ceramide-bound SPT-ORMDL3 complex
Method: single particle / : Xie T, Liu P, Gong X

EMDB-33866:
Cryo-EM structure of SPT-ORMDL3 complex
Method: single particle / : Xie T, Liu P, Gong X

EMDB-33868:
Cryo-EM structure of SPT-ORMDL3 (ORMDL3-deltaN2) complex
Method: single particle / : Xie T, Liu P, Gong X

EMDB-33869:
Cryo-EM structure of SPT-ORMDL3 (ORMDL3-N13A) complex
Method: single particle / : Xie T, Liu P, Gong X

PDB-7yiu:
Cryo-EM structure of the C6-ceramide-bound SPT-ORMDL3 complex
Method: single particle / : Xie T, Liu P, Gong X

PDB-7yiy:
Cryo-EM structure of SPT-ORMDL3 complex
Method: single particle / : Xie T, Liu P, Gong X

PDB-7yj1:
Cryo-EM structure of SPT-ORMDL3 (ORMDL3-deltaN2) complex
Method: single particle / : Xie T, Liu P, Gong X

PDB-7yj2:
Cryo-EM structure of SPT-ORMDL3 (ORMDL3-N13A) complex
Method: single particle / : Xie T, Liu P, Gong X

EMDB-25419:
Previously uncharacterized rectangular bacteria in the dolphin mouth
Method: electron tomography / : Dudek NK, Galaz-Montoya JG, Shi H, Mayer M, Danita C, Celis AI, Wu GH, Behr B, Huang KC, Chiu W, Relman DA

EMDB-24628:
Cryo-EM structure of SARS-CoV-2 spike in complex with non-neutralizing NTD-directed CV3-13 Fab isolated from convalescent individual
Method: single particle / : Chen Y, Pozharski E

PDB-7rq6:
Cryo-EM structure of SARS-CoV-2 spike in complex with non-neutralizing NTD-directed CV3-13 Fab isolated from convalescent individual
Method: single particle / : Chen Y, Pozharski E, Tolbert WD, Pazgier M

EMDB-25200:
CryoEM structure of SARS-CoV-2 HexaPro spike in complex with S2-binding CV3-25
Method: single particle / : Chen Y, Huang R, Pazgier M

EMDB-25564:
Subtomogram averaging of SARS-CoV-2 Spike Protein bound to CV3-1
Method: subtomogram averaging / : Li W, Mothes W

EMDB-25565:
Subtomogram averaging of SARS-CoV-2 Spike Protein bound to Fab CV3-25
Method: subtomogram averaging / : Li W, Mothes W

EMDB-25566:
Subtomogram averaging of SARS-CoV-2 Spike Protein
Method: subtomogram averaging / : Li W, Mothes W

EMDB-30465:
Cryo-EM structure of dengue virus serotype 2 in complex with the scFv fragment of the broadly neutralizing antibody EDE1 C10
Method: single particle / : Zhang X, Sharma A

PDB-7cth:
Cryo-EM structure of dengue virus serotype 2 in complex with the scFv fragment of the broadly neutralizing antibody EDE1 C10
Method: single particle / : Zhang X, Sharma A, Duquerroy S, Zhou ZH, Rey FA

EMDB-30130:
Cryo-EM structure of the encapsulin shell from Mycobacterium smegmatis
Method: single particle / : Tang YT, Mu A, Gong HR, Wang Q, Rao ZH

EMDB-30131:
Cryo-EM structure of the encapsulated DyP-type peroxidase from Mycobacterium smegmatis
Method: single particle / : Tang YT, Mu A, Gong HR, Wang Q, Rao ZH

EMDB-30132:
Cryo-EM structure of the cargo-loaded encapsulin from Mycobacterium smegmatis
Method: single particle / : Tang YT, Mu A, Gong HR, Wang Q, Rao ZH

EMDB-10239:
Structure of the native full-length HIV-1 capsid protein A92E in helical assembly (-12,11)
Method: helical / : Ni T, Gerard S

EMDB-10240:
Structure of the native full-length HIV-1 capsid protein A92E in helical assembly (-13,11)
Method: helical / : Ni T, Gerard S

EMDB-10246:
Structure of the native full-length HIV-1 capsid protein in helical assembly (-13,12)
Method: helical / : Ni T, Gerard S

PDB-6slq:
Structure of the native full-length HIV-1 capsid protein A92E in helical assembly (-12,11)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6slu:
Structure of the native full-length HIV-1 capsid protein A92E in helical assembly (-13,11)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6smu:
Structure of the native full-length HIV-1 capsid protein in helical assembly (-13,12)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-10226:
Structure of the native full-length HIV-1 capsid protein in helical assembly (-13,8)
Method: helical / : Ni T, Gerard S

EMDB-10228:
Structure of the native full-length HIV-1 capsid protein A92E in helical assembly (-13,12)
Method: helical / : Ni T, Gerard S

EMDB-10229:
Structure of the native full-length HIV-1 capsid protein in helical assembly (-13,8)
Method: helical / : Ni T, Gerard S

PDB-6skk:
Structure of the native full-length HIV-1 capsid protein in helical assembly (-13,8)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6skm:
Structure of the native full-length HIV-1 capsid protein A92E in helical assembly (-13,12)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6skn:
Structure of the native full-length HIV-1 capsid protein in helical assembly (-13,8)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-10738:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-8,13)
Method: single particle / : Ni T, Gerard S

EMDB-10739:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-13,8)
Method: single particle / : Ni T, Gerard S

EMDB-10740:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-13,7)
Method: single particle / : Ni T, Gerard S

EMDB-10741:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-7,13)
Method: single particle / : Ni T, Gerard S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more