[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 57 items for (author: gold & vam)

EMDB-52262:
Sub-tomogram average of the wild-type C. elegans respirasome
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52263:
Sub-tomogram average of the wild-type C. elegans I1III2 respiratory supercomplex
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52264:
Sub-tomogram average of wild-type C. elegans complex I
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52265:
Sub-tomogram average of nduf-11(RNAi) C. elegans respiratory complex I
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52266:
Sub-tomogram average of the wild-type C. elegans ATP synthase dimer (narrow membrane curvature)
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52267:
Sub-tomogram average of the wild-type C. elegans ATP synthase dimer (intermediate membrane curvature)
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52268:
Sub-tomogram average of the wild-type C. elegans ATP synthase dimer (wide membrane curvature)
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52269:
Sub-tomogram average of the nduf-11(RNAi) C. elegans ATP synthase dimer (narrow membrane curvature)
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52271:
Sub-tomogram average of the nduf-11(RNAi) C. elegans ATP synthase dimer (intermediate membrane curvature)
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-52272:
Sub-tomogram average of the nduf-11(RNAi) C. elegans ATP synthase dimer (wide membrane curvature)
Method: subtomogram averaging / : Buzzard E, Gold VAM, McLaren M, Zhang D

EMDB-51530:
Capsid of full Haloferax tailed virus 1 without turret head protein gp31.
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M, Stuart W

EMDB-51866:
Tail of full Haloferax tailed virus 1
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

EMDB-51883:
Tail fibre of Haloferax tailed virus 1
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

EMDB-51915:
The baseplate assembly of Haloferax tailed virus 1.
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

EMDB-50521:
Tail of emppty Haloferax tailed virus 1
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

EMDB-19960:
Sulfolobus acidocaldarius AAP filament
Method: helical / : Daum B, Isupov MN, Gaines M, McLaren M, Mollat C

EMDB-19961:
Structure of the archaellum of Sulfolobus acidocaldarius strain MW039 (delta agl3 mutant).
Method: helical / : Daum B, Isupov MN, Gaines M, McLaren M, Mollat C

EMDB-19990:
Structure of the AAP filament of Sulfolobus acidocaldarius strain MW039 (delta agl3 mutant).
Method: helical / : Daum B, Isupov MN, Gaines M, McLaren M, Mollat C

EMDB-19112:
Cuniculiplasma divulgatum filament
Method: helical / : Isupov MN, Gaines M, Daum B, McLaren M

EMDB-19168:
Oxiplasma meridianum archaellum
Method: helical / : Isupov MN, Gaines M, Daum B, McLaren M

EMDB-18700:
Sulfolobus acidocaldarius Archaellum filament.
Method: helical / : Isupov MN, Gaines M, McLaren M, Daum B

EMDB-18633:
Portal protein of empty Haloferax tailed virus 1.
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

EMDB-18642:
Portal capsid interface of full Haloferax tailed virus 1.
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

EMDB-18599:
Portal protein of full Haloferax tailed virus 1.
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

EMDB-18588:
CryoEM structure of the type IV pilin PilA4 from Thermus thermophilus
Method: helical / : Gold VAM, Neuhaus A, Gaines M, Isupov M, McLaren M

EMDB-18593:
CryoEM structure of the type IV pilin PilA5 from Thermus thermophilus
Method: helical / : Gold VAM, Neuhaus A, Gaines M, Isupov M, McLaren M

EMDB-18550:
Turret of Haloferax tailed virus 1
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

EMDB-18559:
C1 turret to capsid interface of full Haloferax tailed virus 1 adjacent to the portal-capsid interface.
Method: single particle / : Zhang D, Daum B, Isupov MN, McLaren M

EMDB-19608:
Sulfolobus acidocaldarius threads (0406) filament.
Method: helical / : Isupov MN, Gaines M, McLaren M, Daum B

EMDB-18119:
Sulfolobus acidocaldarius AAP filament.
Method: helical / : Isupov MN, Gaines M, Daum B, McLaren M

EMDB-18127:
S-layer of archaeon Sulfolobus acidocaldarius by subtomogram averaging
Method: subtomogram averaging / : Gambelli L, McLaren MJ, Daum B

EMDB-18991:
Sub-tomogram average of the C. elegans ATP synthase dimer
Method: subtomogram averaging / : Buzzard EJ, McLaren M, Gold VAM

EMDB-15530:
S-layer protein SlaA from Sulfolobus acidocaldarius at pH 10.0
Method: single particle / : Gambelli L, Isupov MN, Daum B

EMDB-15531:
S-layer protein SlaA from Sulfolobus acidocaldarius at pH 7.0
Method: single particle / : Gambelli L, Isupov MN, Daum B

EMDB-17448:
Spraguea lophii ribosome in the closed conformation by cryo sub tomogram averaging
Method: subtomogram averaging / : Gil Diez P, McLaren M, Isupov MN, Daum B, Conners R, Williams B

EMDB-17457:
Spraguea lophii ribosome dimer
Method: subtomogram averaging / : Gil Diez P, McLaren M, Isupov MN, Daum B, Conners R, Williams B

EMDB-14635:
S-layer protein SlaA from Sulfolobus acidocaldarius at pH 4.0
Method: single particle / : Gambelli L, Isupov MN, Daum B

EMDB-15831:
CryoEM structure of the pointy tip (proteins pIII/pVI/pVIII) from the f1 filamentous bacteriophage
Method: single particle / : Conners R, McLaren M, Gold VAM

EMDB-15832:
CryoEM structure of the round tip (proteins pVII/pVIII/pIX) from the f1 filamentous bacteriophage
Method: single particle / : Conners R, McLaren M, Gold VAM

EMDB-15833:
CryoEM structure of the central filamentous region of the f1 filamentous bacteriophage, consisting of the major capsid protein pVIII
Method: helical / : Conners R, McLaren M, Gold VAM

EMDB-13892:
Spraguea lophii ribosome
Method: single particle / : Gil Diez P, McLaren M

EMDB-13546:
Sulfolobus acidocaldarius 0406 filament.
Method: helical / : Isupov MN, Gaines M

EMDB-12874:
CryoEM structure of the outer membrane secretin pore pIV from the f1 filamentous bacteriophage.
Method: single particle / : Conners R, Gold VAM

EMDB-10647:
CryoEM structure of the wide type IV pilus (PilA4) from Thermus thermophilus
Method: helical / : Neuhaus A, Gold VAM

EMDB-10648:
CryoEM structure of the narrow type IV pilus (PilA5) from Thermus thermophilus
Method: helical / : Neuhaus A, Gold VAM

EMDB-10444:
Sub-tomogram average of the Sulfolobus acidocaldarius S-layer
Method: subtomogram averaging / : Daum B, Gambelli L

EMDB-10445:
Sub-tomogram average of the Sulfolobus solfataricus S-layer
Method: subtomogram averaging / : Daum B, Gambelli L

EMDB-10459:
Sub-tomogram average of the Sulfolobus islandicus S-layer in situ
Method: subtomogram averaging / : Daum B, Gambelli L

EMDB-10460:
Sub-tomogram average of the Sulfolobus acidocaldarius S-layer in situ
Method: subtomogram averaging / : Daum B, Gambelli L

EMDB-3762:
Sub-tomogram average of the cytosolic yeast ribosome associated with mitochondria
Method: subtomogram averaging / : Gold VAM, Chroscicki P, Bragoszewski P, Chacinska A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more