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- EMDB-56466: 70S Coxiella burnetii Ribosome with Doxycycline and HPFcold -

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Basic information

Entry
Database: EMDB / ID: EMD-56466
Title70S Coxiella burnetii Ribosome with Doxycycline and HPFcold
Map data
Sample
  • Complex: Coxiella burnetii 70S Ribosome
    • RNA: x 3 types
    • Protein or peptide: x 50 types
  • Ligand: x 5 types
KeywordsC. burnetii / 70S subunit / doxycycline / triple / stack / antibiotic / pathogen / hibernation factor / HPFcold / cold shock domain / ribosomal peptide / CLaSP / cryo-EM / RIBOSOME
Function / homology
Function and homology information


negative regulation of translational elongation / ribosomal small subunit binding / assembly of large subunit precursor of preribosome / large ribosomal subunit / transferase activity / ribosome biogenesis / ribosome binding / ribosomal small subunit biogenesis / 5S rRNA binding / small ribosomal subunit ...negative regulation of translational elongation / ribosomal small subunit binding / assembly of large subunit precursor of preribosome / large ribosomal subunit / transferase activity / ribosome biogenesis / ribosome binding / ribosomal small subunit biogenesis / 5S rRNA binding / small ribosomal subunit / ribosomal large subunit assembly / small ribosomal subunit rRNA binding / cytosolic small ribosomal subunit / large ribosomal subunit rRNA binding / cytosolic large ribosomal subunit / nucleic acid binding / cytoplasmic translation / tRNA binding / negative regulation of translation / rRNA binding / structural constituent of ribosome / ribosome / translation / ribonucleoprotein complex / mRNA binding / RNA binding / metal ion binding / cytoplasm / cytosol
Similarity search - Function
Cold-shock protein, DNA-binding / 'Cold-shock' DNA-binding domain / : / Ribosome hibernation promoting factor/RaiA / Ribosome hibernation promotion factor-like / Sigma 54 modulation protein / S30EA ribosomal protein / Ribosomal protein L25, long-form / Ribosomal protein L25, beta domain / Ribosomal protein L25, C-terminal / Ribosomal protein TL5, C-terminal domain ...Cold-shock protein, DNA-binding / 'Cold-shock' DNA-binding domain / : / Ribosome hibernation promoting factor/RaiA / Ribosome hibernation promotion factor-like / Sigma 54 modulation protein / S30EA ribosomal protein / Ribosomal protein L25, long-form / Ribosomal protein L25, beta domain / Ribosomal protein L25, C-terminal / Ribosomal protein TL5, C-terminal domain / Ribosomal protein S14, bacterial/plastid / Ribosomal protein L31 type A / Ribosomal protein S21 superfamily / Ribosomal protein S21 / Ribosomal protein L31 signature. / Ribosomal protein L31 / Ribosomal protein L31 superfamily / Ribosomal protein L31 / Ribosomal protein S21 / Ribosomal protein L9 signature. / Ribosomal protein L6, conserved site / Ribosomal protein L6 signature 1. / Ribosomal protein L9, bacteria/chloroplast / Ribosomal protein L9, C-terminal / Ribosomal protein L9, C-terminal domain / Ribosomal protein L21, conserved site / : / Ribosomal protein L21 signature. / Ribosomal protein L9, C-terminal domain superfamily / Ribosomal protein L17 signature. / Ribosomal L25p family / Ribosomal protein L25 / Ribosomal protein L36 signature. / Ribosomal protein L25/Gln-tRNA synthetase, N-terminal / Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily / : / Ribosomal protein L28/L24 superfamily / Ribosomal protein L32p, bacterial type / Ribosomal protein L35, conserved site / Ribosomal protein L35 signature. / Ribosomal protein L9 / Ribosomal protein L9, N-terminal domain superfamily / Ribosomal protein L9, N-terminal / Ribosomal protein L9, N-terminal domain / Ribosomal protein L28 / Ribosomal protein L35, non-mitochondrial / Ribosomal protein L18, bacterial-type / Ribosomal protein S3, bacterial-type / Ribosomal protein S13, bacterial-type / Ribosomal protein S19, bacterial-type / : / Ribosomal protein L6, bacterial-type / Ribosomal protein S7, bacterial/organellar-type / Ribosomal protein S11, bacterial-type / Ribosomal protein S20 / Ribosomal protein S20 superfamily / Ribosomal protein S20 / Ribosomal protein L5, bacterial-type / Ribosomal protein S4, bacterial-type / Ribosomal protein L9/RNase H1, N-terminal / Ribosomal protein S5, bacterial-type / Ribosomal protein L19, conserved site / Ribosomal protein L19 signature. / 30S ribosomal protein S17 / : / Ribosomal protein S6, plastid/chloroplast / Ribosomal protein L36 / Ribosomal protein L36 superfamily / Ribosomal protein L36 / Ribosomal protein L20 signature. / Ribosomal protein L34, conserved site / Ribosomal protein L34 signature. / Ribosomal protein L14P, bacterial-type / Ribosomal protein L27, conserved site / Ribosomal protein L27 signature. / Ribosomal protein L35 / Ribosomal protein L35 superfamily / Ribosomal protein L22, bacterial/chloroplast-type / Ribosomal protein L35 / Ribosomal protein L2, bacterial/organellar-type / Ribosomal protein L33 / Ribosomal protein L18 / Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast / Ribosomal protein L33 / Ribosomal L28 family / Ribosomal protein S9, bacterial/plastid / Ribosomal protein L33 superfamily / Ribosomal protein L28/L24 / Ribosomal protein L30, bacterial-type / Ribosomal protein S16 / Ribosomal protein S16 domain superfamily / Ribosomal protein S16 / L28p-like / Ribosomal protein L16 / Ribosomal protein S15, bacterial-type / Ribosomal protein S6 / Ribosomal protein S6 / Ribosomal protein S6 superfamily / Ribosomal protein L20 / Ribosomal protein S12, bacterial-type
Similarity search - Domain/homology
Large ribosomal subunit protein uL4 / Large ribosomal subunit protein bL9 / Large ribosomal subunit protein bL17 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein uL22 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein bL34 / Large ribosomal subunit protein uL13 ...Large ribosomal subunit protein uL4 / Large ribosomal subunit protein bL9 / Large ribosomal subunit protein bL17 / Large ribosomal subunit protein uL15 / Large ribosomal subunit protein uL16 / Large ribosomal subunit protein uL22 / Large ribosomal subunit protein uL2 / Large ribosomal subunit protein uL3 / Large ribosomal subunit protein bL34 / Large ribosomal subunit protein uL13 / Large ribosomal subunit protein uL29 / Large ribosomal subunit protein uL14 / Large ribosomal subunit protein uL6 / Large ribosomal subunit protein uL30 / Large ribosomal subunit protein bL28 / Large ribosomal subunit protein bL35 / Large ribosomal subunit protein bL32 / Large ribosomal subunit protein bL25 / Large ribosomal subunit protein bL27 / Small ribosomal subunit protein uS3 / Small ribosomal subunit protein uS13 / Large ribosomal subunit protein bL36 / Small ribosomal subunit protein uS9 / Small ribosomal subunit protein bS21 / Large ribosomal subunit protein bL20 / Large ribosomal subunit protein bL31 / Small ribosomal subunit protein bS18 / Small ribosomal subunit protein bS6 / Small ribosomal subunit protein uS15 / Small ribosomal subunit protein bS16 / Large ribosomal subunit protein bL19 / Small ribosomal subunit protein bS20 / Large ribosomal subunit protein bL21 / Large ribosomal subunit protein bL33 / Small ribosomal subunit protein uS4 / Small ribosomal subunit protein uS11 / Small ribosomal subunit protein uS5 / Large ribosomal subunit protein uL18 / Small ribosomal subunit protein uS8 / Small ribosomal subunit protein uS14 / Large ribosomal subunit protein uL5 / Large ribosomal subunit protein uL24 / Small ribosomal subunit protein uS17 / Small ribosomal subunit protein uS19 / Large ribosomal subunit protein uL23 / Small ribosomal subunit protein uS10 / Small ribosomal subunit protein uS7 / Small ribosomal subunit protein uS12 / Ribosome hibernation promoting factor
Similarity search - Component
Biological speciesCoxiella burnetii (bacteria)
Methodsingle particle reconstruction / cryo EM / Resolution: 2.48 Å
AuthorsStuart WS / Isupov MN / Harmer NJ
Funding support United Kingdom, 1 items
OrganizationGrant numberCountry
Biotechnology and Biological Sciences Research Council (BBSRC)BB/M009122/1 United Kingdom
CitationJournal: To Be Published
Title: 70S Coxiella burnetii Ribosome with Doxycycline and HPFcold
Authors: Stuart WS / Isupov MN / McLaren M / Jenkins CH / Monier A / Daum B / Norville IH / Gold VAM / Harmer NJ
History
DepositionJan 22, 2026-
Header (metadata) releaseApr 22, 2026-
Map releaseApr 22, 2026-
UpdateApr 29, 2026-
Current statusApr 29, 2026Processing site: PDBe / Status: Released

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Structure visualization

Supplemental images

emd_56466.png

Downloads & links

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Map

FileDownload / File: emd_56466.map.gz / Format: CCP4 / Size: 244.1 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Projections & slices

Image control

Size
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AxesZ (Sec.)Y (Row.)X (Col.)
1.06 Å/pix.
x 400 pix.
= 424. Å		1.06 Å/pix.
x 400 pix.
= 424. Å		1.06 Å/pix.
x 400 pix.
= 424. Å

Surface

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Images are generated by Spider.

Voxel sizeX=Y=Z: 1.06 Å
Density

Histogram

Histogram (log scale)
Contour LevelBy AUTHOR: 0.078
Minimum - Maximum-0.12711409 - 0.46683782
Average (Standard dev.)0.002072993 (±0.018136175)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions400400400
Spacing400400400
CellA=B=C: 423.99997 Å
α=β=γ: 90.0 °

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Supplemental data

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Half map: #2

Fileemd_56466_half_map_1.map
Projections & Slices
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Half map: #1

Fileemd_56466_half_map_2.map
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Sample components

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Entire : Coxiella burnetii 70S Ribosome

EntireName: Coxiella burnetii 70S Ribosome
Components
  • Complex: Coxiella burnetii 70S Ribosome
    • RNA: 16S ribosomal RNA
    • Protein or peptide: Small ribosomal subunit protein uS3
    • Protein or peptide: Small ribosomal subunit protein uS4
    • Protein or peptide: Small ribosomal subunit protein uS5
    • Protein or peptide: Small ribosomal subunit protein bS6
    • Protein or peptide: Small ribosomal subunit protein uS7
    • Protein or peptide: Small ribosomal subunit protein uS8
    • Protein or peptide: Small ribosomal subunit protein uS9
    • Protein or peptide: Small ribosomal subunit protein uS10
    • Protein or peptide: Small ribosomal subunit protein uS11
    • Protein or peptide: Small ribosomal subunit protein uS12
    • Protein or peptide: Small ribosomal subunit protein uS13
    • Protein or peptide: Small ribosomal subunit protein uS14
    • Protein or peptide: Small ribosomal subunit protein uS15
    • Protein or peptide: Small ribosomal subunit protein bS16
    • Protein or peptide: Small ribosomal subunit protein uS17
    • Protein or peptide: Small ribosomal subunit protein bS18
    • Protein or peptide: Small ribosomal subunit protein uS19
    • Protein or peptide: Small ribosomal subunit protein bS20
    • Protein or peptide: Small ribosomal subunit protein bS21
    • Protein or peptide: Coxiellacae Large Subunit Peptide (CLaSP)
    • Protein or peptide: Large ribosomal subunit protein bL33
    • Protein or peptide: Large ribosomal subunit protein uL24
    • Protein or peptide: Large ribosomal subunit protein uL18
    • Protein or peptide: Large ribosomal subunit protein bL36
    • RNA: 5S ribosomal RNA
    • Protein or peptide: Large ribosomal subunit protein bL19
    • Protein or peptide: Large ribosomal subunit protein uL3
    • Protein or peptide: Large ribosomal subunit protein bL20
    • Protein or peptide: Large ribosomal subunit protein uL5
    • Protein or peptide: Large ribosomal subunit protein uL6
    • Protein or peptide: Large ribosomal subunit protein bL21
    • Protein or peptide: Large ribosomal subunit protein uL13
    • Protein or peptide: Large ribosomal subunit protein uL22
    • Protein or peptide: Large ribosomal subunit protein uL15
    • Protein or peptide: Large ribosomal subunit protein bL17
    • Protein or peptide: Large ribosomal subunit protein uL2
    • Protein or peptide: Large ribosomal subunit protein bL9
    • Protein or peptide: Large ribosomal subunit protein uL29
    • Protein or peptide: Large ribosomal subunit protein uL16
    • Protein or peptide: Large ribosomal subunit protein uL30
    • Protein or peptide: Large ribosomal subunit protein bL25
    • Protein or peptide: Large ribosomal subunit protein bL32
    • Protein or peptide: Large ribosomal subunit protein uL4
    • Protein or peptide: Large ribosomal subunit protein uL14
    • Protein or peptide: Large ribosomal subunit protein bL34
    • Protein or peptide: Large ribosomal subunit protein bL35
    • Protein or peptide: Large ribosomal subunit protein bL31
    • Protein or peptide: Ribosome hibernation promoting factor
    • Protein or peptide: Large ribosomal subunit protein bL27
    • Protein or peptide: Large ribosomal subunit protein uL23
    • Protein or peptide: Large ribosomal subunit protein bL28
    • RNA: 23S ribosomal RNA
  • Ligand: MAGNESIUM ION
  • Ligand: POTASSIUM ION
  • Ligand: ZINC ION
  • Ligand: (4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE
  • Ligand: water

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Supramolecule #1: Coxiella burnetii 70S Ribosome

SupramoleculeName: Coxiella burnetii 70S Ribosome / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#53
Source (natural)Organism: Coxiella burnetii (bacteria) / Strain: NMII

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Macromolecule #1: 16S ribosomal RNA

MacromoleculeName: 16S ribosomal RNA / type: rna / ID: 1 / Number of copies: 1
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 497.437656 KDa
SequenceString: AAUUGAAGAG UUUGAUUCUG GCUCAGAUUG AACGCUAGCG GCAUGCUUAA CACAUGCAAG UCGAACGGCA GCGCGGGGAG CUUGCUCCC UGGCGGCGAG UGGCGGACGG GUGAGUAAUG CGUAGGAAUC UACCUUGUAG UGGGGGAUAA CCUGGGGAAA C UCGGGCUA ...String:
AAUUGAAGAG UUUGAUUCUG GCUCAGAUUG AACGCUAGCG GCAUGCUUAA CACAUGCAAG UCGAACGGCA GCGCGGGGAG CUUGCUCCC UGGCGGCGAG UGGCGGACGG GUGAGUAAUG CGUAGGAAUC UACCUUGUAG UGGGGGAUAA CCUGGGGAAA C UCGGGCUA AUACCGCAUA AUCUCUUUGG AGCAAAGCGG GGGAUCUUCG GACCUCGUGC UAUAAGAUGA GCCUACGUCG GA UUAGCUU GUUGGUGGGG UAAUGGCCUA CCAAGGCGAC GAUCCGUAGC UGGUCUGAGA GGACGAUCAG CCACACUGGG ACU GAGACA CGGCCCAGAC UCCUACGGGA GGCAGCAGUG GGGAAUAUUG GACAAUGGGG GAAACCCUGA UCCAGCAAUG CCGC GUGUG UGAAGAAGGC CUUCGGGUUG UAAAGCACUU UCGGUGGGGA AGAAAUUCUC AAGGGUAAUA UCCUUGGGCG UUGAC GUUA CCCACAGAAG AAGCACUGGC UAACUCUGUG CCAGCAGCC(G7M) CGGUAAUACA GAGAGUGCAA GCGUUAAUCG GA AUCACUG GGCGUAAAGC GCGCGUAGGU GGAUAUUUAA GUCGGAUGUG AAAGCCCUGG GCUUAACCUG GGAAUUGCAC CCG AUACUG GGUAUCUUGA GUAUGGUAGA GGGAAGUGGA AUUUCCGGUG UAGCGGUGAA AUGCGUAGAU AUCGGAAAGA ACAC CAGUG GCGAAGGCGA CUUCCUGGAC CAAUACUGAC ACUGAGGCGC GAAAGCGUGG GGAGCAAACA GGAUUAGAGA CCCUG GUAG UCCACGCCGU CAACGAUGAG AACUAGCUGU UGGGAAGUUC ACUUCUUAGU AGCGAAGCUA ACGCGUUAAG UUCUCC GCC UGGGGAGUAC GGCCGCAAGG UUAAAACUCA AAGAAAUUGA CGGGGGCCCG CACAAGCGGU GGAGCAUGUG GUUUAAU UC GAU(2MG)(5MC)AACGC GAAAAACCUU ACCUACCCUU GACAUCCUCG GAACUUGUCA GAGAUGAUUU GGUGCCUUCG GGAACCGAG UGACAGGUGC UGCAUGGCUG UCGUCAGCUC GUGUCGUGAG AUGUUGGGUU AAGUCCCGUA ACGAGCGCAA C CCUCGUCC UUAGUUGCCA GCGAGUCAAG UCGGGAACUC UAAGGAGACU GCCGGUGAUA AACCGGAGGA AGGUGGGGAU GA UGUCAAG UCAUCAUGGC CCUUACGGGU AGGGCUACAC ACGUGCUACA AUGGGCAGUA CAAAGGGUUG CCAAGCCGCG AGG UGGAGC UAAUCCCAGA AAACUGCUCG UAGUCCGGAU UGGAGUCUGC AACUCGACUC CAUGAAGUUG GAAUCGCUAG UAAU CGCGA AUCAGCAUGU CGCGGUGAAU ACGUUCUCGG GCCUUGUACA CACCG(4OC)CCGU CACACCAUGG GAGUGAAUUG U ACCAGAAG CGGGUAGGCU AACCUUCGGG AGGCCGCUCA CCACGGUAUG AUCCAUGACU GGGGUGAAGU CG(UR3)AACAA G GUAGCCGUAG G(2MG)G(MA6)(MA6)CCUGC GGCUGGAUCA CCUC

GENBANK: GENBANK: AP019757.1

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Macromolecule #26: 5S ribosomal RNA

MacromoleculeName: 5S ribosomal RNA / type: rna / ID: 26 / Number of copies: 1
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 37.630352 KDa
SequenceString:
UUCCUGGCGG CCAUAGCGAG CGGGCCCCAC CUGAUUCCAU UCCGAACUCA GAAGUGAAAA CGCUUAGCGC CGAUGAUAGU GUGGGUCUC CCAUGCGAAA GUAGGUCACC GCCAGGUU

GENBANK: GENBANK: CP103432.1

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Macromolecule #53: 23S ribosomal RNA

MacromoleculeName: 23S ribosomal RNA / type: rna / ID: 53 / Number of copies: 1
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 947.544938 KDa
SequenceString: GGUUGCAUGG UCAAGUGAAU AAGCGCAUAU GGUGGAUGCC UUGGCAGUAA GAGGCGAUGA AGGACGUAGU AGCCUGCGAU AAGCUUCGG GGAGCUGGCA AACAAGCGAU GAUCCGGAGA UUUCCGAAUG GGGAAACCCA ACCUUUCGAG GUUAUCGUAU A CUGAAUUC ...String:
GGUUGCAUGG UCAAGUGAAU AAGCGCAUAU GGUGGAUGCC UUGGCAGUAA GAGGCGAUGA AGGACGUAGU AGCCUGCGAU AAGCUUCGG GGAGCUGGCA AACAAGCGAU GAUCCGGAGA UUUCCGAAUG GGGAAACCCA ACCUUUCGAG GUUAUCGUAU A CUGAAUUC AUAGGUAUAC GAGGCGAACC UGGGGAACUG AAACAUCUAA GUACCCAGAG GAAAAGAAAU CAACCGAGAU UC CGUCAGU AGCGGCGAGC GAAAGCGGAA CAGCCCAGUU ACUAAAUCAU UAUUUGUUCU AGCAGAAUGU UCUGGAAAGU UCA GCCAUA GCGGGUGAUA GCCCCGUACG CGAAAGAGUA AAUAAUGUGG GUAACGAUGA GUAGGUCGGG ACACGUGGUA UCUU GACUG AACAUGGGGG GACCAUCCUC CAAGGCUAAA UACUCCUUAC UGACCGAUAG CGAACCAGUA CCGUGAGGGA AAGGU GAAA AGAACCCCGG CGAGGGGAGU GAAAUAGAAC CUGAAACCGU AUGCGUACAA GCAGUAGGAG CAUUUCUUCG GAAAUG UGA CUGCGUACCU UUUGUAUAAU GGGUCAGCGA CUUACUUGUU GUAGCGAGCU UAACCGUCUA GGGGAGGCGU AGGGAAA CC GAGUCCGAAA UGGGCGUUUA GUUGCAACGA GUAGACCCGA AACCGAGCGA UCUAUCUAUG GCCAGGGUGA AGGUCAGG U AACACUGACU GGAGGCCCGA ACCCACUAAU GUUGAAAAAU UAGGGGAUGA GCUGUGGAUA GGAGUGAAAG GCUAAUCAA GCUCGGAGAU AGCUGGUUCU CCUCGAAAGC UAUUUAGGUA GCGCCUCGUG UAUGACUCUU GGGGGUAGAG CACUGUUUCG GCUAGGGGG CCAUCCCGGC CUACCAAACC GAGGCAAACU CCGAAUACCA AGAAGUUUUA GCACGGGAGA CACACUGCGG G (PSU)GAUAAGG UCCGUGGUGG AAAGGGAAAC AGCCCAGAUC GCCAGCUAAG GUCCCAAAAU CACAGUUAAG UGGAAAAC G AUGUGGGAAG GCUCAGACAG CCAGGAGGUU GGCUUAGAAG CAGCCAUCCU UUAAAGAAAG CGUAAUAGCU CACUGGUCG AGUCGUCCUG CGCGGAAGAU UUAACGGGGC UCAAACUGUG UACCGAAGCU GCGGCAUCAG AAGACACUGU CUUCUGAUGG GUAGAGGAG CGUUCUGUAA GCCUGUGAAG GUGAAUCGAG AGGUUUGCUG GAGGUAUCAG AAGUGCGAAU GCUGACAUAA G UAACGAUA AUGUGGGUGA AAAACCCACA CGCCGAAAGU CUAAGGUUUC CUGCGCAACG UUAAUCGACG CAGGGUGAGU CG GCCCCUA AGGCGAGGCA GAAAUGCGUA GUCGAUGGGA AACGGGUUAA UAUUCCCGUA CUUUAUAAUA CUGCGAUGGG AGG ACGGAG AAGGCUAGGU CAGCCACCCG AUGGUUGUGG UGGUUUAAGU GUGUAGGAAG GGUUCUUUGG CAAAUCCGGG AACU CAAUU CCGAGACAUG AUGACGAAGU ACGAACUUGU UCGUGCAAAG UGAUUGAUGC CACGCUUCCA GGAAAAGUCC CUAAG CUUC AGGUAUUGUA AAACCGUACU AUAAACCGAC ACAGGUGGAC AGGUAGAGAA UACCAAGGCG CUUGAGAGAA CUUGGG UGA AGGAACUAGG CAAAAUGGCA CCGUAACUUC GGGAGAAGGU GCGCCCUUGG UAAGUGAAGG UCCUUGCGAC UGGAGCU GA AAAGGGUUGC AGAUACCAGG UGGCUGCGAC UGUUUACUAA AAACACAGCA CUCUGCAAAC UCGUAAGAGG ACGUAUAG G GUGUGACGCC UGCCCGGUGC CGGAAGGUUA AGUGAUGGGG UUAGCCCUCG GGCGAAGCUC UUGAUCGAAG CCCCGGUAA ACGGCGGCCG (PSU)AACUA(PSU)AAC GGUCCUAAGG UAGCGAAAUU CCUUGUCGGG UAAGUUCCGA CCUGCACGAA UG GCGUAAC GAUAGCCACG CUGUCUCCAC CCAAGACUCA GUGAAAUUGA AAUCGCUGUG AAGAUGCAGC GUACCCGCGG CUA GACGGA AAGACCCCGU GAACCUUUAC UACAGCUUUA CACUGAACUU UGAAUAUGCC UGUGUAGGAU AGGUGGGAGG CUUU GAAGC UGGAGCGCUA GCUCCAGUGG AGCCAACCUU GAAAUACCAC CCUGGCGUGU UUGAGGUUCU AACCCUGUCC CGUAA UCCG GGUCGGGAAC AGUGUAUGGU GGGUAGUUUG ACUG(OMG)GGCGG UCUCCUCCAA AAGAGUAACG GAGGAGUACA AA GGUACCC UCAGCACGGU CGGAAAUCGU GCAUUGUGUG CAAAGGCAUA AGGGUGCUUG ACUGCGAGAC UGACAAGUCG AGC AGGUAC GAAAGUAGGU CUUAGUGAUC CGGUGGUCCU UUAUGGAAGG GCCAUCGCUC AACGGAUAAA AGGUACUCCG GGGA UAACA GGCUGAUACC ACCCAAGAGU UCAUAUCGAC GGUGGUGUUU GGCACCUCG(2MA) (PSU)GUCGGCUCA UCACAUC CU GGGGCUGUAG CCGGUCCCAA GGGUAUGGC(OMU) GUUCGCCAUU UAAAGUGGUA CGUGAGC(PSU)GG GUUUAGAACG UCGUGAGAC AGU(PSU)CGGUCC CUAUCUGCCG UGGGCGUUGG AGAUUUGAGA GGAGCUGCUC CUAGUACGAG AGGACCG GA GUGGACGUAC CUCUGGUGUU CCGGUUGUCA CGCCAGUGGC AUUGCCGGGU AGCUAAGUAC GGACGGGAUA ACCGCUGA A AGCAUCUAAG CGGGAAGCCC CCCUCAAGAU GAGAUCUCCC GGACCUUUAA GGUCCCUAAA GAUUCGUUGA AGACGACAA CGUUGAUAGG CAGGGUGUGG AAGCUCAGUA AUGAGUGAAG CUAACCUGUA CUAAUUAAUC GUGCGACUUG ACUAUGUAAC C

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Macromolecule #2: Small ribosomal subunit protein uS3

MacromoleculeName: Small ribosomal subunit protein uS3 / type: protein_or_peptide / ID: 2 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 25.671746 KDa
SequenceString: MGQKVNPVGM RIGITRDWTS NWYADKKDFA DRLNEDLNVR QLLQKRLKGA AVSRIQIERP ARNAKIIIHS ARPGVIIGKK GGEIEALRD EIFKVMKVPV HITIEEVRKP ELDAKLVAEN IAQQLERRVM FRRAMKRAVQ NTLRQGALGV KISVSGRLGG A EIARTEWY ...String:
MGQKVNPVGM RIGITRDWTS NWYADKKDFA DRLNEDLNVR QLLQKRLKGA AVSRIQIERP ARNAKIIIHS ARPGVIIGKK GGEIEALRD EIFKVMKVPV HITIEEVRKP ELDAKLVAEN IAQQLERRVM FRRAMKRAVQ NTLRQGALGV KISVSGRLGG A EIARTEWY REGRVPLHTF RADIDYATAS AKTTYGIIGV KVWIFKGEVH APKPQAEEAA PQETEEEVK

UniProtKB: Small ribosomal subunit protein uS3

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Macromolecule #3: Small ribosomal subunit protein uS4

MacromoleculeName: Small ribosomal subunit protein uS4 / type: protein_or_peptide / ID: 3 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 23.770688 KDa
SequenceString: MARYLGPKCR LSRREKTDLQ LKSGIRAIDS KCNIERIPGM HWQRRGRTTD YGVQLRMKQM IKRYYDVLEK QFANYYKQAD RLKGSTGDN LLKLLESRLD NVVYRMGFAA TRAEARQLIS HKAILVNGEV VNIPSYQVKP GDIIEVRSRA KGQLRIKGAL E LAQQRAPI ...String:
MARYLGPKCR LSRREKTDLQ LKSGIRAIDS KCNIERIPGM HWQRRGRTTD YGVQLRMKQM IKRYYDVLEK QFANYYKQAD RLKGSTGDN LLKLLESRLD NVVYRMGFAA TRAEARQLIS HKAILVNGEV VNIPSYQVKP GDIIEVRSRA KGQLRIKGAL E LAQQRAPI SWIEVDTKKM TGTFKEQPDV AELPAEFKVN LVVELYSK

UniProtKB: Small ribosomal subunit protein uS4

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Macromolecule #4: Small ribosomal subunit protein uS5

MacromoleculeName: Small ribosomal subunit protein uS5 / type: protein_or_peptide / ID: 4 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 17.510307 KDa
SequenceString:
MQEAGIGTTT DGIQEKLVAV RRTAKVVKGG RVFGFSALVV AGDGDGKVGF GLGKAREVPS AIQKATENAR RNMISVPLYG ATLHHAIKA THASSTVLML PASEGTGVIA GNAMRAIFEV MGVQNVLAKC IGSSNPINVV RATFKGLKQM ETPESVAAKR G KAIEEIVE

UniProtKB: Small ribosomal subunit protein uS5

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Macromolecule #5: Small ribosomal subunit protein bS6

MacromoleculeName: Small ribosomal subunit protein bS6 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 14.603657 KDa
SequenceString:
MRHYEIVILV HPDQSSQVPA MVERYQSMIK EKDGKVHRLE DWGRRQLAYS IDKVHKAHYL LMNIESDQGV ISELENAFRY NDAVIRSLI LKRDHAITKS SLIMQGAEKG KSSRKEKVAA EAEASEEA

UniProtKB: Small ribosomal subunit protein bS6

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Macromolecule #6: Small ribosomal subunit protein uS7

MacromoleculeName: Small ribosomal subunit protein uS7 / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 21.334717 KDa
SequenceString:
MARRKAAPKR ETLPDPLFHS ELLAKFINAV MRNGKKSVAE KIVYGALDVV AKRVQNKSGE QGDGDGESGG KAGGIKKRSL GDIRTDENA RALALETFKG ALDKVMPNVE VKSRRVGGST YQVPVEIRMA RRQALARRWL VEYANKRNEK TMVLRLAHEI L DAVEGRGG AIKKREDVHR MAKANQAFAH YKW

UniProtKB: Small ribosomal subunit protein uS7

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Macromolecule #7: Small ribosomal subunit protein uS8

MacromoleculeName: Small ribosomal subunit protein uS8 / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 14.59201 KDa
SequenceString:
MMQDPISDML TRIRNAQAVR KKEVVMPRSK LKMSIANVLK EEGYIVDYRE EGDLTKAQLV ITLKYHEGES VISEIRRVSS PALQVYKSK DELPKVKNGL GIAIISTSKG VMSDRQARRL GEGGEVLCYV S

UniProtKB: Small ribosomal subunit protein uS8

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Macromolecule #8: Small ribosomal subunit protein uS9

MacromoleculeName: Small ribosomal subunit protein uS9 / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 15.332496 KDa
SequenceString:
MAQAAKKQNL GTGRRKTSSA RVFLRSGTGQ IIINGLPLDE YFGRETARMV VRQPLVKLDV QSRFDVYATV QGGGDSGQAG AIRHGITRA LIQYDEEGGE GGTWRSTLRK AGFVTRDPRM VERKKVGLHG ARRGTQFSKR

UniProtKB: Small ribosomal subunit protein uS9

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Macromolecule #9: Small ribosomal subunit protein uS10

MacromoleculeName: Small ribosomal subunit protein uS10 / type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 12.614599 KDa
SequenceString:
MSDNQRIRIR LKAFDHRLID RSTREIVETA RRTGAIIRGP ILLPTKIERY TVLISPNIDK DARDQYEIRT HKRLVDISEP TDKTVDALM KLDLAAGVDV QIELLNKKSG A

UniProtKB: Small ribosomal subunit protein uS10

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Macromolecule #10: Small ribosomal subunit protein uS11

MacromoleculeName: Small ribosomal subunit protein uS11 / type: protein_or_peptide / ID: 10 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 13.534661 KDa
SequenceString:
MAKKRYRKVT EGIAHIKATF NNTMISVSDP QGNVLCFRSA GGSGFKGSRK GTPYGAQMAS EEVGRLARDN FDMRRIAVRV KGPGAGRDS AIRGLRSAGL EVIHLEDRTP LPHNGCRPRK KRRV

UniProtKB: Small ribosomal subunit protein uS11

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Macromolecule #11: Small ribosomal subunit protein uS12

MacromoleculeName: Small ribosomal subunit protein uS12 / type: protein_or_peptide / ID: 11 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 13.786059 KDa
SequenceString:
MARINQLVRK PRRARAKKSD VPALEGCPQR RGVCTRVYTT TPKKPNSALR KVARVRITNG AEVTAYIGGE GHNLQEHSVV LIRGGRVKD LPGVRYHIVR GSLDTAGVSG RRRGRSKYGE KKPKE

UniProtKB: Small ribosomal subunit protein uS12

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Macromolecule #12: Small ribosomal subunit protein uS13

MacromoleculeName: Small ribosomal subunit protein uS13 / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 13.420679 KDa
SequenceString:
MAARIAGVNI PVQKHARIAL QAIYGIGNSR ALEICKEAKI DPATKVKDLS EAELDALRTE VGKFSVEGDL RRERSMDIKR KMDLGAYEG IRHRRGLPLR GQRTRSNART RKGKRKPIRS

UniProtKB: Small ribosomal subunit protein uS13

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Macromolecule #13: Small ribosomal subunit protein uS14

MacromoleculeName: Small ribosomal subunit protein uS14 / type: protein_or_peptide / ID: 13 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 11.599955 KDa
SequenceString:
MAKLSVIERN KKRVRKSQSA RKKRLELKKI IKKGTPEEQE QALLKLQKRP RDESPVRTRD RCRLCGRPCG TFKKFGLCRI HLREAAMRA DVPGLKKASW

UniProtKB: Small ribosomal subunit protein uS14

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Macromolecule #14: Small ribosomal subunit protein uS15

MacromoleculeName: Small ribosomal subunit protein uS15 / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 10.340205 KDa
SequenceString:
MSLASAETAK IVKEYQLGKD DTGSPEVQVA ILTAKIIKLT DHMKAHKHDH HSRRGLLRMV SQRRKLLNFL KRNDLQRYLK LIERLGLRS

UniProtKB: Small ribosomal subunit protein uS15

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Macromolecule #15: Small ribosomal subunit protein bS16

MacromoleculeName: Small ribosomal subunit protein bS16 / type: protein_or_peptide / ID: 15 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 15.592907 KDa
SequenceString:
MVVIRLARGG SKKNPFYHIV VADRRKPRDG RFIERVGYYN PMARGQDIRL QLEKERISHW LNQGAQTSLR VKHLIKKLEK SPEEAQKGG MRKGEFKRLQ AEQAAKAQKK AVATEEPKAE EAKEAPPAES QAAEGKEE

UniProtKB: Small ribosomal subunit protein bS16

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Macromolecule #16: Small ribosomal subunit protein uS17

MacromoleculeName: Small ribosomal subunit protein uS17 / type: protein_or_peptide / ID: 16 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 10.328146 KDa
SequenceString:
MNKNEKMVRS LMGTVVSNKM NDTVVVRVER RVKHPKYGKF IKRSTKIHAH DKGNEGQIGD IVTIRECRPI SKTKSWTLVK INERAEKVE

UniProtKB: Small ribosomal subunit protein uS17

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Macromolecule #17: Small ribosomal subunit protein bS18

MacromoleculeName: Small ribosomal subunit protein bS18 / type: protein_or_peptide / ID: 17 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 8.569 KDa
SequenceString:
MSFRRKKFCA FDAKNLQEID YKDVNTLKDY IMESGRVVPS RITGTCAKHQ RQISRAIKLA RYLALLPYCD THQ

UniProtKB: Small ribosomal subunit protein bS18

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Macromolecule #18: Small ribosomal subunit protein uS19

MacromoleculeName: Small ribosomal subunit protein uS19 / type: protein_or_peptide / ID: 18 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria) / Strain: NMII
Molecular weightTheoretical: 10.842623 KDa
SequenceString:
MPRSTNKGPF VDHHLMKKVD QAQKEGSKRP IKTWSRRSMV VPEMVGLTIA IHNGRQHVPV YISENMVGHK LGEFAITRTF RAHSGDRKA KKEGEK

UniProtKB: Small ribosomal subunit protein uS19

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Macromolecule #19: Small ribosomal subunit protein bS20

MacromoleculeName: Small ribosomal subunit protein bS20 / type: protein_or_peptide / ID: 19 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 9.981456 KDa
SequenceString:
MANSAQAKKR ARQNEKRELH NASQRSAVRT AVKKILKSLQ ANDSSAAQSA YQHAVQILDK AAGRRIIHPN KAARLKSRLS QKIKNLSSS Q

UniProtKB: Small ribosomal subunit protein bS20

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Macromolecule #20: Small ribosomal subunit protein bS21

MacromoleculeName: Small ribosomal subunit protein bS21 / type: protein_or_peptide / ID: 20 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 8.927503 KDa
SequenceString:
MPMIDVPDNN AFDVAMRRFK RACEKAGILS KLRQIEYYEK PTSKRKRKRA AAVKRYAKKL QKEQEALERE RTRY

UniProtKB: Small ribosomal subunit protein bS21

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Macromolecule #21: Coxiellacae Large Subunit Peptide (CLaSP)

MacromoleculeName: Coxiellacae Large Subunit Peptide (CLaSP) / type: protein_or_peptide / ID: 21 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 2.53008 KDa
SequenceString:
MPRGRGPHGP KKFRKRNKKS R

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Macromolecule #22: Large ribosomal subunit protein bL33

MacromoleculeName: Large ribosomal subunit protein bL33 / type: protein_or_peptide / ID: 22 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 8.054479 KDa
SequenceString:
MAVSPREKIM LQSTGKTKAG KPTGTFYTTY KNKRNTTDKL NIKKFDPRAW NSETSKCGMH VLFKEKKIPK

UniProtKB: Large ribosomal subunit protein bL33

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Macromolecule #23: Large ribosomal subunit protein uL24

MacromoleculeName: Large ribosomal subunit protein uL24 / type: protein_or_peptide / ID: 23 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 11.814896 KDa
SequenceString:
MAIKKIKKDD TVIVITGRDK GRQGKVLKVL PNSRLLVEGI NLVKKHVKPN PNKNEQGGIL ERELSIHVSN VAIYNPAAKK ADRVGIKTL EDGSKVRIFK SNGEVIDV

UniProtKB: Large ribosomal subunit protein uL24

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Macromolecule #24: Large ribosomal subunit protein uL18

MacromoleculeName: Large ribosomal subunit protein uL18 / type: protein_or_peptide / ID: 24 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria) / Strain: NMII
Molecular weightTheoretical: 13.137419 KDa
SequenceString:
MDKQEKRIRR ARRTRAKIKE LGAVRLCVHR SLNHIYAQLI SPRDSKVLVC ASTLEKEVRS QIKHGGNIQA ATAIGKLIAQ RAKKAGVTK VAFDRSGYKY HGRVRALAEA VREGGIEF

UniProtKB: Large ribosomal subunit protein uL18

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Macromolecule #25: Large ribosomal subunit protein bL36

MacromoleculeName: Large ribosomal subunit protein bL36 / type: protein_or_peptide / ID: 25 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 4.668729 KDa
SequenceString:
MKVRASVKRM CRNCKVIRRN GVVRVICSDA RHKQRQKGGK

UniProtKB: Large ribosomal subunit protein bL36

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Macromolecule #27: Large ribosomal subunit protein bL19

MacromoleculeName: Large ribosomal subunit protein bL19 / type: protein_or_peptide / ID: 27 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 13.302429 KDa
SequenceString:
MNNIIQLLET EQTQGKEIPD FRAGDTVTVQ VKVKEGNRER LQAFEGVVIA RRHRGLNSSF TVRKVSHGEG VERVFQLYSP LIASIKVNR RGDVRRAKLY YLRNLRGRKA KIKEKI

UniProtKB: Large ribosomal subunit protein bL19

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Macromolecule #28: Large ribosomal subunit protein uL3

MacromoleculeName: Large ribosomal subunit protein uL3 / type: protein_or_peptide / ID: 28 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 23.547062 KDa
SequenceString: MSIGLIGRKC GMTRIFTETG SSIPVTVVEV ILNRITQVKT VETDGYRAFQ VAYGKKSSAR VNKPLAGHYS KAAVEAGNAL REFRLGNEE LTEAKAGDEL KVDIFKEGQV VDVRGLTRGK GFAGTVKRHN FRTQDATHGN SLSHRAPGSI GQCQTPGRVW K GKKMAGQL ...String:
MSIGLIGRKC GMTRIFTETG SSIPVTVVEV ILNRITQVKT VETDGYRAFQ VAYGKKSSAR VNKPLAGHYS KAAVEAGNAL REFRLGNEE LTEAKAGDEL KVDIFKEGQV VDVRGLTRGK GFAGTVKRHN FRTQDATHGN SLSHRAPGSI GQCQTPGRVW K GKKMAGQL GNVYCTVQSQ EIIKVDVERN LLLIKGALPG APGGEVIITQ SSKKRKEDK

UniProtKB: Large ribosomal subunit protein uL3

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Macromolecule #29: Large ribosomal subunit protein bL20

MacromoleculeName: Large ribosomal subunit protein bL20 / type: protein_or_peptide / ID: 29 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 13.475973 KDa
SequenceString:
MPRVKRGVTA RARHKKVLTK AKGYYGARSR VFRVAKQAVI KAAQYAYRDR KQRKRQFRAL WIVRINAAAR EHGLSYSRLI NGLMKASVA IDRKNLAELA VYDKAAFGKL AEKAKQALGG

UniProtKB: Large ribosomal subunit protein bL20

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Macromolecule #30: Large ribosomal subunit protein uL5

MacromoleculeName: Large ribosomal subunit protein uL5 / type: protein_or_peptide / ID: 30 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 20.782402 KDa
SequenceString:
MVELQELYKK TITPALQKEF GFKSVMAVPR LEKITLNMGL GEAVADKKVI ERAMDDMIKI SGQKPLITYA RKSEAGFKIR AGWPIGCKV TLRRDRMYEF LKRLISIAIP RIRDFRGLSP KSFDGRGNYS LGIREQIVFP EIQYDKVDAI RGMDITITTT A RTDEEGRA LLKAFGFPLK DESR

UniProtKB: Large ribosomal subunit protein uL5

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Macromolecule #31: Large ribosomal subunit protein uL6

MacromoleculeName: Large ribosomal subunit protein uL6 / type: protein_or_peptide / ID: 31 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 19.228453 KDa
SequenceString:
MVSRVAKNPI KIPTGVEVNV AGQQITVKGK LGTLTRVIHR AVKVTKTDAE LQTICANDSP GSNALAGTAR AVLANMVQGV HTGFQRKLV MVGVGYRAKA EGKKLNLTVG LSHPVNIEMP EGITVETPSQ TEIIVKGADK QRVSQVAANI REIRPPEPYK G KGIRYDNE RVILKEAKKK

UniProtKB: Large ribosomal subunit protein uL6

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Macromolecule #32: Large ribosomal subunit protein bL21

MacromoleculeName: Large ribosomal subunit protein bL21 / type: protein_or_peptide / ID: 32 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 12.785894 KDa
SequenceString:
MYAIIKTGGK QYRVTEGQML KVEKLAQDVG QSVKFDDVLM VAAGDELHIG TPSVKDAAVT AEVVDQGRQA KIEIIKFKRR KHHMKRQGH RQDFTAVKIT EIALGKAKKE VKTDGA

UniProtKB: Large ribosomal subunit protein bL21

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Macromolecule #33: Large ribosomal subunit protein uL13

MacromoleculeName: Large ribosomal subunit protein uL13 / type: protein_or_peptide / ID: 33 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 15.840458 KDa
SequenceString:
MATYMANAKT VSPRWLLVNA EGKTLGRLAS RIAAILRGKH KAEFTPHVDA GDFVVVINVD KLKVTGNKTQ DKQYHHHSGY PGGLKTINF ADLQAKKPQR ILELAIKGML PKGPLGRQLY RKLKIYAGDQ HPHQAQQPEL IDL

UniProtKB: Large ribosomal subunit protein uL13

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Macromolecule #34: Large ribosomal subunit protein uL22

MacromoleculeName: Large ribosomal subunit protein uL22 / type: protein_or_peptide / ID: 34 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 12.60547 KDa
SequenceString:
MEVAAKLKYA RISAQKARLV ADQVRGLGAE QAVNLLRFSN KKAAALMKKV LDSAIANAEH NEGADIDELK VSTVMVDEGP SARRFHARA RGRANQILKR TCHITVKVSD SQVEND

UniProtKB: Large ribosomal subunit protein uL22

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Macromolecule #35: Large ribosomal subunit protein uL15

MacromoleculeName: Large ribosomal subunit protein uL15 / type: protein_or_peptide / ID: 35 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 15.320006 KDa
SequenceString:
MQLNDLKPAK GARHQKLRVG RGIGSGKGKT AGRGHKGQHS RAGGYHKVGF EGGQMPLQRR VPKFGFTSRK ELISAEVRLG ELNKISGDV VDLASLKAAN IISRQIKRVK IFAAGKLEKP VTIRGLRVTK GVKAAVEAAG GKIE

UniProtKB: Large ribosomal subunit protein uL15

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Macromolecule #36: Large ribosomal subunit protein bL17

MacromoleculeName: Large ribosomal subunit protein bL17 / type: protein_or_peptide / ID: 36 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 14.574902 KDa
SequenceString:
MHHRKSGRHL NRTSAHRKAM LRNMAVSLFQ HELIKTTLPK AKELRRVVEP LITLAKEDTV ANRRLAFNRL RDDAIVAKLF KEIAPRHKE RPGGYCRVLK YGFRNGDSAP MAIVELVDRE ESESSED

UniProtKB: Large ribosomal subunit protein bL17

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Macromolecule #37: Large ribosomal subunit protein uL2

MacromoleculeName: Large ribosomal subunit protein uL2 / type: protein_or_peptide / ID: 37 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 30.481426 KDa
SequenceString: MALVKTKPTS PGRRFVVKVV HPELHKGDPY APLVESKNRI NSRNNQGRIT VRRRGGGHKR NYRIIDFKRD KEGIEGKVER LEYDPNRSA HIALVLYPDG ERRYIIAPKG VHKGSKVVSG REAPIRPGNC LPLQNIPLGA TIHNIELKPG KGAQLVRSAG A SAQLAAKE ...String:
MALVKTKPTS PGRRFVVKVV HPELHKGDPY APLVESKNRI NSRNNQGRIT VRRRGGGHKR NYRIIDFKRD KEGIEGKVER LEYDPNRSA HIALVLYPDG ERRYIIAPKG VHKGSKVVSG REAPIRPGNC LPLQNIPLGA TIHNIELKPG KGAQLVRSAG A SAQLAAKE GIYAIIRMRS GETRKILAVC RACIGEVSNS EHNLRSLGKA GAKRWRGRRP TVRGVAMNPV DHPHGGGEGK TS GGRHPVS PTGKPTKGYK TRRNKRTSNM IIRDRRKK

UniProtKB: Large ribosomal subunit protein uL2

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Macromolecule #38: Large ribosomal subunit protein bL9

MacromoleculeName: Large ribosomal subunit protein bL9 / type: protein_or_peptide / ID: 38 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 16.603986 KDa
SequenceString:
MKLILQEKVA NLGNIGDQVV VKPGYARNFL LPLGKAVPAT PEHIAEFEKQ RAELEKAAAE LLAKAKARAK KLEDKSFKIT ANASDEGRL FGSIGPREIA QAITEAGIEI EKREVDLSQG PIRQVGEYEV PLRLHTDVSV NVKIEVAPEN SNS

UniProtKB: Large ribosomal subunit protein bL9

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Macromolecule #39: Large ribosomal subunit protein uL29

MacromoleculeName: Large ribosomal subunit protein uL29 / type: protein_or_peptide / ID: 39 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 7.717034 KDa
SequenceString:
MNVNDLRNKT KAELKKELLE LLKEQFNLRM QKGGGEAPRP HLFKRVRRDI ARVKTLLGEK ERNNE

UniProtKB: Large ribosomal subunit protein uL29

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Macromolecule #40: Large ribosomal subunit protein uL16

MacromoleculeName: Large ribosomal subunit protein uL16 / type: protein_or_peptide / ID: 40 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 15.532356 KDa
SequenceString:
MLQPSNRKYR KDFKGRNRGV ASRGNRVSFG EFGLKATECA RITARQLEAA RRTIARHIKR GGKITIRIFP DKPITKKPLE VRQGKGKGS VEYWVALVQP GRMIFEIEGV DEALAREAFS RAAAKLPLKC LFVKRTVM

UniProtKB: Large ribosomal subunit protein uL16

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Macromolecule #41: Large ribosomal subunit protein uL30

MacromoleculeName: Large ribosomal subunit protein uL30 / type: protein_or_peptide / ID: 41 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 7.312629 KDa
SequenceString:
MVQEKKLRVT LVKSKYGRKP GHRECIEGLG LRRMHQTVEV TDTPANRGMI EKVSYLLMID EEV

UniProtKB: Large ribosomal subunit protein uL30

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Macromolecule #42: Large ribosomal subunit protein bL25

MacromoleculeName: Large ribosomal subunit protein bL25 / type: protein_or_peptide / ID: 42 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 26.577008 KDa
SequenceString: MAAESFELIA ELREFTGKSA ARRMRRFEDK VPGTVYGAGK APQSITLLQK DLLKALESES TFSSILTLKV GDKKQKVILK ALQRHHTKP KIVHIDFQRI KASEKLIMNV PLHFLGEDDC PGVEAGGVVS HLQSEVEIRC LPADLPEYIE VDLSHLQLDE S VHLSNLKL ...String:
MAAESFELIA ELREFTGKSA ARRMRRFEDK VPGTVYGAGK APQSITLLQK DLLKALESES TFSSILTLKV GDKKQKVILK ALQRHHTKP KIVHIDFQRI KASEKLIMNV PLHFLGEDDC PGVEAGGVVS HLQSEVEIRC LPADLPEYIE VDLSHLQLDE S VHLSNLKL PAGVGLTSAV DEEHDSPIAS VHMPRVSKAD VEAEAAEAAL AKEAATEAAE EEETEKPASE AEASGEAEQA DT DKKE

UniProtKB: Large ribosomal subunit protein bL25

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Macromolecule #43: Large ribosomal subunit protein bL32

MacromoleculeName: Large ribosomal subunit protein bL32 / type: protein_or_peptide / ID: 43 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 7.486457 KDa
SequenceString:
MAVQKSRKTR SRRGMRRSHD ALRGAMLSKD PTTGETHLRH HISPEGYYKG RQILTPKESY EDEE

UniProtKB: Large ribosomal subunit protein bL32

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Macromolecule #44: Large ribosomal subunit protein uL4

MacromoleculeName: Large ribosomal subunit protein uL4 / type: protein_or_peptide / ID: 44 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 22.409729 KDa
SequenceString: MELPVNSFDK KEASTLTVAD SAFGSEYKEG LVHQVVNAYL AGGRAGTKAQ KTRREVSGGG AKPWRQKGTG RARAGSSRSP LWRSGGVAF AAKPRDFTQK VNRKMYRSAM ASILSELIRR EQLVVVDSLK LNEPKTRELK ESLKKLNLGN VLIIIDGDDR N INLASRNM ...String:
MELPVNSFDK KEASTLTVAD SAFGSEYKEG LVHQVVNAYL AGGRAGTKAQ KTRREVSGGG AKPWRQKGTG RARAGSSRSP LWRSGGVAF AAKPRDFTQK VNRKMYRSAM ASILSELIRR EQLVVVDSLK LNEPKTRELK ESLKKLNLGN VLIIIDGDDR N INLASRNM VGVSVCDALH VDPVSLVAAE NIVVTVDAVK RLEERLS

UniProtKB: Large ribosomal subunit protein uL4

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Macromolecule #45: Large ribosomal subunit protein uL14

MacromoleculeName: Large ribosomal subunit protein uL14 / type: protein_or_peptide / ID: 45 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 13.564108 KDa
SequenceString:
MIQTQSIVDV ADNSGARRVM CIKVLGGSKR RYANIGDVIK VSIKEAIPRG KVKKGDVMHA VVVRTRKGVR RNDGSLIRFD NNAVVLLNN QLQLVGTRVF GPVVRELRTD KFMKIISLAL EVL

UniProtKB: Large ribosomal subunit protein uL14

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Macromolecule #46: Large ribosomal subunit protein bL34

MacromoleculeName: Large ribosomal subunit protein bL34 / type: protein_or_peptide / ID: 46 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 5.357379 KDa
SequenceString:
MKRTYQPSKQ KRNRTHGFRA RMATKNGRQV LNRRRAKGRK RLTV

UniProtKB: Large ribosomal subunit protein bL34

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Macromolecule #47: Large ribosomal subunit protein bL35

MacromoleculeName: Large ribosomal subunit protein bL35 / type: protein_or_peptide / ID: 47 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 7.415878 KDa
SequenceString:
MPKLKTNRGA VKRFKVTGSG KIKRAASNHN HILTKKSQKR KRRLRKIHEV APSDMRAVSE MLRD

UniProtKB: Large ribosomal subunit protein bL35

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Macromolecule #48: Large ribosomal subunit protein bL31

MacromoleculeName: Large ribosomal subunit protein bL31 / type: protein_or_peptide / ID: 48 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 9.096483 KDa
SequenceString:
MKENIHPPYK QIKVTCSCGN TFMTGSTLDR ELHLEICSAC HPFYTGQQKM VDTAGRVERF RKKYAKRRAA NASPEDEKK

UniProtKB: Large ribosomal subunit protein bL31

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Macromolecule #49: Ribosome hibernation promoting factor

MacromoleculeName: Ribosome hibernation promoting factor / type: protein_or_peptide / ID: 49 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 21.176209 KDa
SequenceString:
MRRSFMQVPL QITLRNIDPT PAIEDRIHKK ADKLSQYSDQ IISCHIVVEL PKRHQHQGKL YNVRINLTLP GKEFAVNRNE VEDLYVAIR NAFDDMARKV EEEMRMRMGH VKTHPELLQG EIVRLFKEKD FGFIATPDGE EFYFNAGNVV HPTFEKLEVG T TVQFIEAI GDDGAQAHRV SAKER

UniProtKB: Ribosome hibernation promoting factor

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Macromolecule #50: Large ribosomal subunit protein bL27

MacromoleculeName: Large ribosomal subunit protein bL27 / type: protein_or_peptide / ID: 50 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 10.069655 KDa
SequenceString:
MAHKKAGGST RNGRDSNPKM LGVKRFGGER VLAGNIIVRQ RGTHYRPGEN MGMGRDHTLY ALIEGKVKFT RKGPKKRNFV SIEPLEESQ P

UniProtKB: Large ribosomal subunit protein bL27

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Macromolecule #51: Large ribosomal subunit protein uL23

MacromoleculeName: Large ribosomal subunit protein uL23 / type: protein_or_peptide / ID: 51 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 10.828598 KDa
SequenceString:
MNEERLFEIL LAPHISEKGA LTTGQYVFEV MPDATKPEIK RAVEKQFNVT VKSVRTCNVK GKTTRFRQVR GRRKNWKKAY VMLAPGSEI DIAAGE

UniProtKB: Large ribosomal subunit protein uL23

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Macromolecule #52: Large ribosomal subunit protein bL28

MacromoleculeName: Large ribosomal subunit protein bL28 / type: protein_or_peptide / ID: 52 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Coxiella burnetii (bacteria)
Molecular weightTheoretical: 9.266986 KDa
SequenceString:
MAKVCQVTGK RPQSGNNVSH ANKKTNRRFL PNLKKRRFWL PDEKRFITLT VSTHGMRIID KLGINAVLKK IREREKESK

UniProtKB: Large ribosomal subunit protein bL28

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Macromolecule #54: MAGNESIUM ION

MacromoleculeName: MAGNESIUM ION / type: ligand / ID: 54 / Number of copies: 220 / Formula: MG
Molecular weightTheoretical: 24.305 Da

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Macromolecule #55: POTASSIUM ION

MacromoleculeName: POTASSIUM ION / type: ligand / ID: 55 / Number of copies: 167 / Formula: K
Molecular weightTheoretical: 39.098 Da

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Macromolecule #56: ZINC ION

MacromoleculeName: ZINC ION / type: ligand / ID: 56 / Number of copies: 3 / Formula: ZN
Molecular weightTheoretical: 65.409 Da

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Macromolecule #57: (4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDR...

MacromoleculeName: (4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE
type: ligand / ID: 57 / Number of copies: 3 / Formula: DXT
Molecular weightTheoretical: 444.435 Da
Chemical component information

ChemComp-DXT:
(4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE

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Macromolecule #58: water

MacromoleculeName: water / type: ligand / ID: 58 / Number of copies: 15 / Formula: HOH
Molecular weightTheoretical: 18.015 Da
Chemical component information

ChemComp-HOH:
WATER

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

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Sample preparation

Concentration0.05 mg/mL
BufferpH: 7.5
Component:
ConcentrationFormulaName
25.0 mMC8H18N2O4SHEPES
100.0 mM25Potassium Acetate
15.0 mMMg(OAc)Magnesium Acetate
1.0 mMC4H10O2S2DTT

Details: BS100 ribosomal resuspension buffer
GridModel: Quantifoil R2/2 / Material: COPPER / Mesh: 300 / Support film - Material: CARBON / Support film - topology: CONTINUOUS / Support film - Film thickness: 2
VitrificationCryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 298 K / Details: Blot time 4 s, blot force 1, blot total 1.

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Electron microscopy

MicroscopeTFS KRIOS
DetailsSuper-resolution binned 2 in EPU
Image recordingFilm or detector model: GATAN K3 (6k x 4k) / Digitization - Dimensions - Width: 5760 pixel / Digitization - Dimensions - Height: 4092 pixel / Number real images: 34720 / Average electron dose: 45.0 e/Å2
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Cs: 2.7 mm / Nominal defocus max: 2.0 µm / Nominal defocus min: 0.8 µm / Nominal magnification: 81000
Sample stageCooling holder cryogen: NITROGEN
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

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Image processing

CTF correctionSoftware - Name: cryoSPARC (ver. 4) / Type: PHASE FLIPPING AND AMPLITUDE CORRECTION
Startup modelType of model: NONE / Details: Ab initio reconstruction in cryoSPARC
Final reconstructionResolution.type: BY AUTHOR / Resolution: 2.48 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: cryoSPARC (ver. 4) / Number images used: 44196
Initial angle assignmentType: MAXIMUM LIKELIHOOD
Final angle assignmentType: MAXIMUM LIKELIHOOD / Software - Name: cryoSPARC (ver. 4)
Final 3D classificationNumber classes: 10 / Software - Name: cryoSPARC (ver. 4)
FSC plot (resolution estimation)

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Atomic model buiding 1

Initial model
ChainDetails
source_name: AlphaFold, initial_model_type: in silico model
source_name: Other, initial_model_type: in silico modelModel Angelo
Output model

PDB-9tze:
70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

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