[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 34 items for (author: ginger & l)

EMDB-47333:
CryoEM structure of the human antibodies PIV3HN-05 and PIV3HN-13 in complex with the parainfluenza virus hemagglutinin-neuraminidase protein
Method: single particle / : Mousa JJ, Miller RJ

PDB-9dzq:
CryoEM structure of the human antibodies PIV3HN-05 and PIV3HN-13 in complex with the parainfluenza virus hemagglutinin-neuraminidase protein
Method: single particle / : Mousa JJ, Miller RJ

EMDB-27031:
Accurate computational design of genetically encoded 3D protein crystals
Method: single particle / : Li Z, Borst AJ, Baker D

EMDB-40926:
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Method: single particle / : Weidle C, Borst A

PDB-8cwy:
Accurate computational design of genetically encoded 3D protein crystals
Method: single particle / : Li Z, Borst AJ, Baker D

PDB-8szz:
CryoEM Structure of Computationally Designed Nanocage O32-ZL4
Method: single particle / : Weidle C, Borst A

EMDB-26363:
Head region of insulin receptor ectodomain (A-isoform) bound to the non-insulin agonist IM459
Method: single particle / : Kirk NS, Lawrence MC

EMDB-26364:
Head region of insulin receptor ectodomain (A-isoform) bound to the non-insulin agonist IM462
Method: single particle / : Kirk NS, Lawrence MC

PDB-7u6d:
Head region of insulin receptor ectodomain (A-isoform) bound to the non-insulin agonist IM459
Method: single particle / : Kirk NS, Lawrence MC

PDB-7u6e:
Head region of insulin receptor ectodomain (A-isoform) bound to the non-insulin agonist IM462
Method: single particle / : Kirk NS, Lawrence MC

EMDB-26704:
Cryo-EM Structure of the Neutralizing Antibody MPV467 in Complex with Prefusion Human Metapneumovirus F Glycoprotein
Method: single particle / : Rush SA, McLellan JS

PDB-7ur4:
Cryo-EM Structure of the Neutralizing Antibody MPV467 in Complex with Prefusion Human Metapneumovirus F Glycoprotein
Method: single particle / : Rush SA, McLellan JS

EMDB-26586:
Negative stain EM map of Y2 COBRA hemagglutinin in complex with monoclonal antibody P1-05
Method: single particle / : Han J, Dzimianski JV, DuBois RM, Ward A

EMDB-23211:
Cryo-EM structure of human ACE2 receptor bound to protein encoded by vaccine candidate BNT162b1
Method: single particle / : Lees JA, Han S

EMDB-23215:
Cryo-EM structure of protein encoded by vaccine candidate BNT162b2
Method: single particle / : Lees JA, Han S

PDB-7l7f:
Cryo-EM structure of human ACE2 receptor bound to protein encoded by vaccine candidate BNT162b1
Method: single particle / : Lees JA, Han S

PDB-7l7k:
Cryo-EM structure of protein encoded by vaccine candidate BNT162b2
Method: single particle / : Lees JA, Han S

EMDB-11628:
Distance-dependent synaptic vesicle protein organisation.
Method: electron tomography / : Ginger L, Malsam J, Sonnen AF-P, Morado D, Scheutzow A, Sollner TH, Briggs JAG

EMDB-10134:
CryoEM structure of murine perforin-2 ectodomain in a pre-pore form
Method: single particle / : Ni T, Yu X

EMDB-10135:
CryoEM structure of murine perforin-2 ectodomain in a pore form
Method: single particle / : Ni T, Yu X

PDB-6sb3:
CryoEM structure of murine perforin-2 ectodomain in a pre-pore form
Method: single particle / : Ni T, Yu X, Gilbert RJC

PDB-6sb5:
CryoEM structure of murine perforin-2 ectodomain in a pore form
Method: single particle / : Ni T, Yu X, Gilbert RJC

EMDB-0553:
Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2
Method: single particle / : Meyer NL, Xie Q

PDB-6nz0:
Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2
Method: single particle / : Meyer NL, Xie Q, Davulcu O, Yoshioka C, Chapman MS

EMDB-0621:
Structure of the AAV2 with its Cell Receptor, AAVR
Method: subtomogram averaging / : Hu GQ, Meyer NL, Stagg SM, Chapman MS, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich D, Trzynka A, David L

EMDB-0622:
Structure of the AAV2 with its Cell Receptor, AAVR
Method: subtomogram averaging / : Hu GQ, Meyer NL, Stagg SM, Chapman MS, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich D, Trzynka A, David L

EMDB-0623:
Structure of the AAV2 with its Cell Receptor, AAVR
Method: electron tomography / : Hu GQ, Meyer NL, Stagg SM, Chapman MS, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich D, Trzynka A, David L

EMDB-0624:
Structure of the AAV2 with its Cell Receptor, AAVR
Method: electron tomography / : Hu GQ, Meyer NL, Stagg SM, Chapman MS, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich D, Trzynka A, David L

EMDB-7793:
Thermostablilized dephosphorylated chicken CFTR
Method: single particle / : Fay JF, Riordan JR

EMDB-7794:
Thermostabilized phosphorylated chicken CFTR
Method: single particle / : Fay JF, Riordan JR

PDB-6d3r:
Thermostablilized dephosphorylated chicken CFTR
Method: single particle / : Fay JF, Riordan JR

PDB-6d3s:
Thermostabilized phosphorylated chicken CFTR
Method: single particle / : Fay JF, Riordan JR, Chen ZJ

EMDB-1619:
Three-dimensional Structure of Tropism-Switching Bordetella Bacteriophage
Method: subtomogram averaging / : Dai W, Hodes A, Hui WH, Gingery M, Miller JF, Zhou ZH

EMDB-1620:
Three-dimensional Structure of Tropism-Switching Bordetella Bacteriophage
Method: single particle / : Dai W, Hodes A, Hui WH, Gingery M, Miller JF, Zhou ZH

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more