[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 117 items for (author: funk & j)

EMDB-57178:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57179:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2, UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57180:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57298:
SKP1-FBXO22-UNC10088-NSD2 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57299:
CUL1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57301:
CUL1 C-term, RBX1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57302:
Consensus Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57303:
SKP1-FBXO22-UNC10088-NSD2 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57304:
CUL1-C-terminus-RBX1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57305:
SKP1-CUL1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57306:
Consensus Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57308:
SKP1-FBXO22-UNC10088-NSD2 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57309:
CUL1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57310:
CUL1 C-term, RBX1 locally refined Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-57311:
Consensus Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

PDB-29hg:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10088
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

PDB-29hh:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2, UNC10088 and Bach1
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

PDB-29hi:
Cryo-EM structure of the CUL1-RBX1-SKP1-FBXO22 SCF ubiquition ligase in complex with NSD2 via UNC10415667
Method: single particle / : Amann SJ, Robertson KC, Grishkovskaya I, Liu T, James LI, Brown NB, Haselbach D

EMDB-53855:
CryoEM structure of a membrane protein associated with a contractile injection in Salmonella enterica subspecies salamae
Method: single particle / : Ejaz RN, Tillmann HP, Taylor NMI, Siborova M, Sofos NH

EMDB-53857:
Cryo-EM structure of an extracellular contractile injection system in Salmonella enterica subspecies salamae, the sheath and inner tube module in extended state.
Method: helical / : Ejaz RN, Tillmann HP, Sofos NH, Siborova M, Taylor NMI

EMDB-53858:
Cryo-EM structure of an extracellular contractile injection system in Salmonella enterica subspecies salamae, the sheath in contracted state.
Method: helical / : Ejaz RN, Tillmann HP, Taylor NMI, Siborova M, Sofos NH

EMDB-53859:
Cryo-EM structure of a contractile injection system in Salmonella enterica subspecies Salamae, the cap portion in extended state.
Method: single particle / : Ejaz RN, Tillmann HP, Sofos NH, Siborova M, Taylor NMI

EMDB-53919:
Cryo-EM structure of a contractile injection system in Salmonella enterica subspecies Salamae, the baseplate portion in extended state.
Method: single particle / : Ejaz RN, Tillmann HP, Sofos NH, Siborova M, Taylor NMI

PDB-9r9a:
CryoEM structure of a membrane protein associated with a contractile injection in Salmonella enterica subspecies salamae
Method: single particle / : Ejaz RN, Tillmann HP, Taylor NMI, Siborova M, Sofos NH

PDB-9r9h:
Cryo-EM structure of an extracellular contractile injection system in Salmonella enterica subspecies salamae, the sheath and inner tube module in extended state.
Method: helical / : Ejaz RN, Tillmann HP, Sofos NH, Siborova M, Taylor NMI

PDB-9r9i:
Cryo-EM structure of an extracellular contractile injection system in Salmonella enterica subspecies salamae, the sheath in contracted state.
Method: helical / : Ejaz RN, Tillmann HP, Taylor NMI, Siborova M, Sofos NH

PDB-9r9n:
Cryo-EM structure of a contractile injection system in Salmonella enterica subspecies Salamae, the cap portion in extended state.
Method: single particle / : Ejaz RN, Tillmann HP, Sofos NH, Siborova M, Taylor NMI

PDB-9rce:
Cryo-EM structure of a contractile injection system in Salmonella enterica subspecies Salamae, the baseplate portion in extended state.
Method: single particle / : Ejaz RN, Tillmann HP, Sofos NH, Siborova M, Taylor NMI

EMDB-53876:
Influenza A/H7N9 polymerase in complex with a 70-mer template in stalled elongation with backtracking and stem.
Method: single particle / : Arragain B, Cusack S

EMDB-53877:
Influenza A/H7N9 polymerase in complex with a 70-mer RNA template, in stalled elongation.
Method: single particle / : Arragain B, Cusack S

PDB-9raf:
Influenza A/H7N9 polymerase in complex with a 70-mer template in stalled elongation with backtracking and stem.
Method: single particle / : Arragain B, Cusack S

PDB-9rag:
Influenza A/H7N9 polymerase in complex with a 70-mer RNA template, in stalled elongation.
Method: single particle / : Arragain B, Cusack S

EMDB-19496:
Structure of the formin Cdc12 bound to the barbed end of phalloidin-stabilized F-actin.
Method: single particle / : Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P

EMDB-19497:
Cryo-EM reconstruction of the formin Cdc12 bound to the barbed end of F-actin (without phalloidin)
Method: single particle / : Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P

EMDB-19499:
Structure of the F-actin barbed end bound by Cdc12 and profilin (ring complex) at a resolution of 6.3 Angstrom
Method: single particle / : Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P

EMDB-19501:
Structure of the undecorated barbed end of F-actin.
Method: single particle / : Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P

EMDB-19503:
Structure of the F-actin barbed end bound by formin mDia1
Method: single particle / : Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P

EMDB-19522:
Structure of the formin INF2 bound to the barbed end of F-actin.
Method: single particle / : Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P

PDB-8rtt:
Structure of the formin Cdc12 bound to the barbed end of phalloidin-stabilized F-actin.
Method: single particle / : Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P

PDB-8rty:
Structure of the F-actin barbed end bound by Cdc12 and profilin (ring complex) at a resolution of 6.3 Angstrom
Method: single particle / : Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P

PDB-8ru0:
Structure of the undecorated barbed end of F-actin.
Method: single particle / : Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P

PDB-8ru2:
Structure of the F-actin barbed end bound by formin mDia1
Method: single particle / : Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P

PDB-8rv2:
Structure of the formin INF2 bound to the barbed end of F-actin.
Method: single particle / : Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P

EMDB-14532:
Structure of P. luminescens TccC3-F-actin complex
Method: single particle / : Belyy A, Raunser S

EMDB-14533:
Structure of ADP-ribosylated F-actin
Method: single particle / : Belyy A, Raunser S

PDB-7z7h:
Structure of P. luminescens TccC3-F-actin complex
Method: single particle / : Belyy A, Raunser S

PDB-7z7i:
Structure of ADP-ribosylated F-actin
Method: single particle / : Belyy A, Raunser S

EMDB-13343:
Structure of capping protein bound to the barbed end of a cytoplasmic actin filament
Method: single particle / : Funk J, Merino F

PDB-7pdz:
Structure of capping protein bound to the barbed end of a cytoplasmic actin filament
Method: single particle / : Funk J, Merino F, Schacks M, Rottner K, Raunser S, Bieling P

EMDB-12656:
Cryo-EM structure of the MukBEF-MatP-DNA head module
Method: single particle / : Buermann F, Lowe J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more