[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 48 items for (author: filizola & m)

EMDB-41578:
mGluR3 class 1 in the presence of the antagonist LY 341495
Method: single particle / : Strauss A, Levitz J

EMDB-45242:
mGluR3 in the presence of the antagonist LY 341495 and positive allosteric modulator VU6023326 class 2
Method: single particle / : Strauss A, Levitz J

PDB-8trd:
mGluR3 class 1 in the presence of the antagonist LY 341495
Method: single particle / : Strauss A, Levitz J

EMDB-41501:
mGluR3 in the presence of the agonist LY379268 and PAM VU6023326
Method: single particle / : Strauss A, Levitz J

EMDB-41567:
Metabotropic glutamate receptor 3 class 3 bound to antagonist LY 341495
Method: single particle / : Strauss A, Levitz J

EMDB-41568:
mGluR3 in the presence of the agonist LY379268
Method: single particle / : Strauss A, Levitz J

EMDB-41577:
mGluR3 in the presence of the antagonist LY 341495 and positive allosteric modulator VU6023326
Method: single particle / : Strauss A, Levitz J

EMDB-44861:
metabotropic glutamate receptor subtype three bound to the antagonist LY 341495, class two
Method: single particle / : Strauss A, Levitz J

PDB-8tqb:
mGluR3 in the presence of the agonist LY379268 and PAM VU6023326
Method: single particle / : Strauss A, Levitz J

PDB-8tr0:
Metabotropic glutamate receptor 3 class 3 bound to antagonist LY 341495
Method: single particle / : Strauss A, Levitz J

PDB-8tr2:
mGluR3 in the presence of the agonist LY379268
Method: single particle / : Strauss A, Levitz J

PDB-8trc:
mGluR3 in the presence of the antagonist LY 341495 and positive allosteric modulator VU6023326
Method: single particle / : Strauss A, Levitz J

EMDB-42241:
Serotonin 1E receptor (5-HT1eR)-Gi1 Complex bound with Mianserin
Method: single particle / : Zilberg G, Warren AL, Wacker D

EMDB-42245:
Serotonin 1E receptor (5-HT1eR)-Gi1 Complex bound with Setiptiline
Method: single particle / : Wacker D, Parpounas AK, Warren AL, Zilberg G

PDB-8ugy:
Serotonin 1E receptor (5-HT1eR)-Gi1 Complex bound with Mianserin
Method: single particle / : Zilberg G, Warren AL, Wacker D

PDB-8uh3:
Serotonin 1E receptor (5-HT1eR)-Gi1 Complex bound with Setiptiline
Method: single particle / : Wacker D, Parpounas AK, Warren AL, Zilberg G

EMDB-29409:
Full-length mouse 5-HT3A receptor in complex with ALB148471, pre-activated
Method: single particle / : Felt KC, Chakrapani S

EMDB-29410:
Full-length mouse 5-HT3A receptor in complex with SMP100, pre-activated
Method: single particle / : Felt KC, Chakrapani S

EMDB-29411:
Full-length mouse 5-HT3A receptor in complex with serotonin, pre-activated
Method: single particle / : Felt KC, Chakrapani S

EMDB-29418:
Full-length mouse 5-HT3A receptor in complex with serotonin, open-like
Method: single particle / : Felt KC, Chakrapani S

EMDB-29421:
Full-length mouse 5-HT3A receptor in complex with SMP100, open-like
Method: single particle / : Felt KC, Chakrapani S

EMDB-29422:
Full-length mouse 5-HT3A receptor in complex with ALB148471, open-like
Method: single particle / : Felt KC, Chakrapani S

PDB-8frw:
Full-length mouse 5-HT3A receptor in complex with ALB148471, pre-activated
Method: single particle / : Felt KC, Chakrapani S

PDB-8frx:
Full-length mouse 5-HT3A receptor in complex with SMP100, pre-activated
Method: single particle / : Felt KC, Chakrapani S

PDB-8frz:
Full-length mouse 5-HT3A receptor in complex with serotonin, pre-activated
Method: single particle / : Felt KC, Chakrapani S

PDB-8fsb:
Full-length mouse 5-HT3A receptor in complex with serotonin, open-like
Method: single particle / : Felt KC, Chakrapani S

PDB-8fsp:
Full-length mouse 5-HT3A receptor in complex with SMP100, open-like
Method: single particle / : Felt KC, Chakrapani S

PDB-8fsz:
Full-length mouse 5-HT3A receptor in complex with ALB148471, open-like
Method: single particle / : Felt KC, Chakrapani S

EMDB-23245:
Integrin AlphaIIbBeta3-PT25-2 Complex
Method: single particle / : Bush MW, Walz T

PDB-7la4:
Integrin AlphaIIbBeta3-PT25-2 Complex
Method: single particle / : Bush MW, Walz T, Coller B, Filizola M, Spasic A, Nesic D, Li J

EMDB-21511:
Cryo-EM structure of 5HT3A receptor in presence of Alosetron
Method: single particle / : Basak S, Chakrapani S

EMDB-21512:
Cryo-EM structure of 5HT3A receptor in presence of Ondansetron
Method: single particle / : Basak S, Chakrapani S

EMDB-21518:
Cryo-EM structure of 5HT3A receptor in presence of Palonosetron
Method: single particle / : Basak S, Chakrapani S

PDB-6w1j:
Cryo-EM structure of 5HT3A receptor in presence of Alosetron
Method: single particle / : Basak S, Chakrapani S

PDB-6w1m:
Cryo-EM structure of 5HT3A receptor in presence of Ondansetron
Method: single particle / : Basak S, Chakrapani S

PDB-6w1y:
Cryo-EM structure of 5HT3A receptor in presence of Palonosetron
Method: single particle / : Basak S, Chakrapani S

EMDB-21044:
Cryo-EM structure of the integrin AlphaIIbBeta3-Abciximab complex
Method: single particle / : Nesic D, Zhang Y

PDB-6v4p:
Structure of the integrin AlphaIIbBeta3-Abciximab complex
Method: single particle / : Nesic D, Zhang Y, Spasic A, Li J, Provasi D, Filizola M, Walz T, Coller BS

EMDB-20291:
ZINC17988990-bound TRPV5 in nanodiscs
Method: single particle / : Hughes TET, Rosario JSD

EMDB-20292:
ZINC9155420-bound TRPV5 in nanodiscs
Method: single particle / : Hughes TET, Rosario JSD

PDB-6pbe:
ZINC17988990-bound TRPV5 in nanodiscs
Method: single particle / : Hughes TET, Rosario JSD, Kapoor A, Yazici AT, Fluck EC, Filizola M, Rohacs T, Moiseenkova-Bell VY

PDB-6pbf:
ZINC9155420-bound TRPV5 in nanodiscs
Method: single particle / : Hughes TET, Rosario JSD, Kapoor A, Yazici AT, Fluck EC, Filizola M, Rohacs T, Moiseenkova-Bell VY

EMDB-0469:
Cryo-EM structure of 5HT3A receptor in presence of granisetron
Method: single particle / : Basak S, Chakrapani S

PDB-6np0:
Cryo-EM structure of 5HT3A receptor in presence of granisetron
Method: single particle / : Basak S, Chakrapani S

EMDB-7058:
Structure of TRPV5 in complex with econazole
Method: single particle / : Hughes TET, Lodowski DT

PDB-6b5v:
Structure of TRPV5 in complex with econazole
Method: single particle / : Hughes TET, Lodowski DT, Huynh KW, Yazici A, del Rosario J, Kapoor A, Basak S, Samanta A, Chakrapani S, Zhou ZH, Filizola M, Rohacs T, Han S, Moiseenkova-Bell VY

EMDB-5450:
Inward-Facing Conformation of the Zinc Transporter YiiP revealed by Cryo-electron Microscopy
Method: helical / : Coudray N, Valvo S, Hu M, Lasala R, Kim C, Vink M, Zhou M, Provasi D, Filizola M, Tao J, Fang J, Penczek PA, Ubarretxena-Belandia I, Stokes DL

PDB-3j1z:
Inward-Facing Conformation of the Zinc Transporter YiiP revealed by Cryo-electron Microscopy
Method: helical / : Coudray N, Valvo S, Hu M, Lasala R, Kim C, Vink M, Zhou M, Provasi D, Filizola M, Tao J, Fang J, Penczek PA, Ubarretxena-Belandia I, Stokes DL, Transcontinental EM Initiative for Membrane Protein Structure (TEMIMPS)

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more