[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 5,603 items for (author: feng & w)

EMDB-64679:
Cryo-EM structure of the 48-nm repeat doublet microtubule from mouse sperm
Method: single particle / : Liu Q, Gui M, Wu JP, Zhou LN

PDB-9v10:
Cryo-EM structure of the 48-nm repeat doublet microtubule from mouse sperm
Method: single particle / : Liu Q, Gui M, Wu JP, Zhou LN

EMDB-65230:
Focused map of Type II-A CRISPR integrase prespacer catching complex, State I
Method: single particle / : Li ZX, Xiao YB

EMDB-65231:
Composite map of Type II-A CRISPR integrase prespacer catching complex, State I
Method: single particle / : Li ZX, Xiao YB

EMDB-65232:
Focused map of Type II-A CRISPR integrase prespacer catching complex, State II
Method: single particle / : Li ZX, Xiao YB

EMDB-65165:
Cryo-EM structure of the spermine-bound sea lamprey TAAR348
Method: single particle / : Jiang KX, Zheng Y, Xu F

EMDB-65169:
Cryo-EM structure of the spermine-bound sea lamprey TAAR348-Gs complex
Method: single particle / : Jiang KX, Zheng Y, Xu F

EMDB-65187:
Cryo-EM structure of the spermine-bound sea lamprey TAAR348-Gs complex
Method: single particle / : Jiang KX, Zheng Y, Xu F

PDB-9vmg:
Cryo-EM structure of the spermine-bound sea lamprey TAAR348-Gs complex
Method: single particle / : Jiang KX, Zheng Y, Xu F

EMDB-75730:
Protocadherin-15 extracellular domains 1-7
Method: single particle / : Liang X, Dillard L, Pathak R, Twomey EC, Muller U

PDB-11iy:
Protocadherin-15 extracellular domains 1-7
Method: single particle / : Liang X, Dillard L, Pathak R, Twomey EC, Muller U

EMDB-68245:
Cryo-EM structure of AsCas12a in complex with crDNA and RNA target
Method: single particle / : Lam WH, Wu X, Hsing IM, Zhai Y

PDB-22fn:
Cryo-EM structure of AsCas12a in complex with crDNA and RNA target
Method: single particle / : Lam WH, Wu X, Hsing IM, Zhai Y

EMDB-63446:
The head region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

EMDB-63447:
The head-arm region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

EMDB-63448:
The hinge-arm region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

EMDB-63449:
HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

PDB-9lwi:
The head region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

PDB-9lwj:
The head-arm region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

PDB-9lwk:
The hinge-arm region of HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

PDB-9lwl:
HBx-Smc5/6 ubiquitination complex
Method: single particle / : Tong C, Lili D, Hongshuai L, Jinhong Z, Qian X, Lanfeng W

EMDB-62230:
TRiC purified from bovine sperm flagella, concensus map
Method: single particle / : Meng X, Cong Y

EMDB-62231:
TRiC purified from bovine flagellar, focused refinement on E-domain
Method: single particle / : Meng X, Cong Y

EMDB-62236:
TRiC from bovine flagella, focused refinement on one-ring
Method: single particle / : Meng X, Cong Y

EMDB-62249:
Bovine Flagellar TRiC
Method: single particle / : Cong Y, Meng X

PDB-9kcf:
Bovine Flagellar TRiC
Method: single particle / : Cong Y, Meng X

EMDB-65597:
Cryo-EM structure of E. coli RNA polymerase in complex with EP1
Method: single particle / : Yuan L, Feng Y

EMDB-65598:
Cryo-EM structure of E. coli RNA polymerase in complex with PP1
Method: single particle / : Yuan L, Feng Y

EMDB-65600:
Cryo-EM structure of E. coli RNA polymerase in complex with VP1
Method: single particle / : Yuan L, Feng Y

PDB-9w3d:
Cryo-EM structure of E. coli RNA polymerase in complex with EP1
Method: single particle / : Yuan L, Feng Y

PDB-9w3e:
Cryo-EM structure of E. coli RNA polymerase in complex with PP1
Method: single particle / : Yuan L, Feng Y

PDB-9w3g:
Cryo-EM structure of E. coli RNA polymerase in complex with VP1
Method: single particle / : Yuan L, Feng Y

EMDB-71013:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 1 with flexibly bound DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71014:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 2 with flexibly bound DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71015:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 3 with disordered DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71016:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 1 with sharply bent DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71017:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 2 with less bent DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71018:
Cryo-EM map of the E. coli clamp loader DnaX-complex alone
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71021:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 1 the DNA recognition state
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71022:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 1 with fully open clamp and unsettled DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71023:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 2 with fully open clamp and settled DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71024:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 3 with partially closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71025:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 4 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71026:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 5 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

EMDB-71027:
Cryo-EM map of the E. coli clamp loader DnaX-complex loading beta-clamp onto 10-nt gapped DNA in state 2 conformer 6 with fully closed clamp
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyb:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 1 with flexibly bound DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyc:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 2 with flexibly bound DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyd:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 1 conformer 3 with disordered DNA at the shoulder
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oye:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 1 with sharply bent DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

PDB-9oyf:
Structure of the E. coli clamp loader DnaX-complex loading beta-clamp onto 1-nt gapped DNA in state 2 conformer 2 with less bent DNA
Method: single particle / : Zheng F, Yao YN, Georgescu R, Lyu M, O'Donnell ME, Li H

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more