[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 703 items for (author: erik & l)

EMDB-77046:
Thermotoga maritima threonylcarbamoyl transfer complex (TsaB2D) in complex with Escherichia coli tRNA(THR)
Method: single particle / : Kutchuashvili A, Swairjo MA

EMDB-77048:
Thermotoga maritima threonylcarbamoyl transfer complex (TsaB2D) in complex with Thermotoga maritima tRNA(LYS)
Method: single particle / : Kutchuashvili A, Swairjo MA

PDB-13fn:
Thermotoga maritima threonylcarbamoyl transfer complex (TsaB2D) in complex with Escherichia coli tRNA(THR)
Method: single particle / : Kutchuashvili A, Swairjo MA

PDB-13fo:
Thermotoga maritima threonylcarbamoyl transfer complex (TsaB2D) in complex with Thermotoga maritima tRNA(LYS)
Method: single particle / : Kutchuashvili A, Swairjo MA

EMDB-55723:
Adenosine receptor A2a (A2AR)-beta-lactamase fusion bound to beta-lactamase inhibitory protein II (BLIPII) and ZM241385
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

EMDB-56449:
Consensus map of A2AR-beta-lactamase fusion + BLIPII
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

EMDB-56450:
Focused map on beta-lactamase + BLIPII region
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

EMDB-56451:
A2AR-focused map, with ligand ZM241385
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

PDB-9t9p:
Adenosine receptor A2a (A2AR)-beta-lactamase fusion bound to beta-lactamase inhibitory protein II (BLIPII) and ZM241385
Method: single particle / : Shah NR, Bisson C, Hutchin A, McFarlane CR, Oosterlaken M, Pavic A, Zebisch M

EMDB-72977:
Octopus sensory receptor CRT1 bound to Progesterone
Method: single particle / : Jiang H, Hibbs RE

PDB-9yi4:
Octopus sensory receptor CRT1 bound to Progesterone
Method: single particle / : Jiang H, Hibbs RE

EMDB-70609:
BtCap14 SAVED domain + 2',3'-cGAMP
Method: single particle / : Tak U, Hartwick EW, Whiteley AT

PDB-9om7:
BtCap14 SAVED domain + 2',3'-cGAMP
Method: single particle / : Tak U, Hartwick EW, Whiteley AT

EMDB-72906:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

PDB-9yfu:
Structure of GPR61 bound to inverse agonist compound 15
Method: single particle / : Lees JA, Dias JM, Han S

EMDB-52627:
Ice-free ESIBD structure of GroEL
Method: single particle / : Barrass SV, Esser TK, Mowry NJ, Eriksson L, Hruby J, Seeley LT, Drabbels M, Baker LA, Rauschenbach S, Lorenz UJ

EMDB-71677:
HIV-1 bnAb 1-23 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

EMDB-71678:
HIV-1 bnAb 9-71 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

PDB-9pit:
HIV-1 bnAb 1-23 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

PDB-9piv:
HIV-1 bnAb 9-71 in complex with BG505 MD39 SOSIP and RM19R
Method: single particle / : Bader DLV, Ozorowski G, Ward AB

EMDB-53252:
Pre-activated 9-subunit COP9 signalosome and neddylated SCF (Skp1-Skp2-Cks1) complex structure
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Shaaban M, Enchev RI

EMDB-53254:
Dissociation-state-1 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-53255:
Dissociation-state-2 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo0:
Pre-activated 9-subunit COP9 signalosome and neddylated SCF (Skp1-Skp2-Cks1) complex structure
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Shaaban M, Enchev RI

PDB-9qo2:
Dissociation-state-1 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo3:
Dissociation-state-2 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-52626:
ESIBD structure of GroEL
Method: single particle / : Barrass SV, Esser TK, Mowry NJ, Eriksson L, Hruby J, Seeley LT, Drabbels M, Baker LA, Rauschenbach S, Lorenz UJ

EMDB-53253:
Activated 9-subunit COP9 signalosome and neddylated SCF (SKP1-SKP2-CKS1) complex structure
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Shaaban M, Enchev RI

PDB-9qo1:
Activated 9-subunit COP9 signalosome and neddylated SCF (SKP1-SKP2-CKS1) complex structure
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Shaaban M, Enchev RI

EMDB-53256:
Dissociation-state-3 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-53257:
Dissociation-state-4 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-53258:
9-subunit COP9 signalosome complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo4:
Dissociation-state-3 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo5:
Dissociation-state-4 of 9-subunit CSN and SCF (SKP1-SKP2-CKS1) complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

PDB-9qo6:
9-subunit COP9 signalosome complex
Method: single particle / : Ding S, Clapperton JA, Maeots ME, Enchev RI

EMDB-53358:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

EMDB-53359:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

EMDB-53360:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

EMDB-53361:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

PDB-9qtp:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

PDB-9qtq:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

PDB-9qtr:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

PDB-9qts:
Structure of the energy converting methyltransferase (Mtr) of Methanosarcina mazei in complex with a novel protein binder
Method: single particle / : Reif-Trauttmansdorff T, Herdering E, Bohn S, Pascoa TC, Kumar A, Zimmer E, Schmitz RA, Schuller JM

EMDB-52230:
Plunge-frozen beta-galactosidase
Method: single particle / : Barrass SV, Esser TK, Mowry NJ, Eriksson L, Hruby J, Seeley LT, Drabbels M, Baker LA, Rauschenbach S, Lorenz UJ

EMDB-52244:
Soft-landed and rehydrated beta-galactosidase (averaged structure)
Method: single particle / : Barrass SV, Esser TK, Mowry NJ, Eriksson L, Hruby J, Seeley LT, Drabbels M, Baker LA, Rauschenbach S, Lorenz UJ

EMDB-52260:
Soft-landed and rehydrated beta-galactosidase (best particles)
Method: single particle / : Barrass SV, Esser TK, Mowry NJ, Eriksson L, Hruby J, Seeley LT, Drabbels M, Baker LA, Rauschenbach S, Lorenz UJ

EMDB-52274:
Soft-landed beta-galactosidase
Method: single particle / : Barrass SV, Esser TK, Mowry NJ, Eriksson L, Hruby J, Seeley LT, Drabbels M, Baker LA, Rauschenbach S, Lorenz UJ

EMDB-52282:
Plunge-frozen GroEL
Method: single particle / : Barrass SV, Esser TK, Mowry NJ, Eriksson L, Hruby J, Seeley LT, Drabbels M, Baker LA, Rauschenbach S, Lorenz UJ

EMDB-52284:
Soft-landed and rehydrated GroEL
Method: single particle / : Barrass SV, Esser TK, Mowry NJ, Eriksson L, Hruby J, Seeley LT, Drabbels M, Baker LA, Rauschenbach S, Lorenz UJ

PDB-9hki:
Plunge-frozen beta-galactosidase
Method: single particle / : Barrass SV, Esser TK, Mowry NJ, Eriksson L, Hruby J, Seeley LT, Drabbels M, Baker LA, Rauschenbach S, Lorenz UJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more