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Showing 1 - 50 of 6,265 items for (author: du & w)

EMDB-55134:
P. abyssi hibernation factor Hib bound to ATP (Hib-PTC conformation)
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-55140:
Cryo-EM structure of the N-terminal domain of Hib bound to the L1 stalk of Pyrococcus abyssi 70S
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9sr9:
P. abyssi hibernation factor Hib bound to ATP (Hib-PTC conformation)
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9srf:
Cryo-EM structure of the N-terminal domain of Hib bound to the L1 stalk of Pyrococcus abyssi 70S
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-55458:
In-cell structure of dark-treated chlL-deleted C.reinhardtii chloroplast 70S ribosome in translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55459:
In-cell structure of dark-treated chlL-deleted C.reinhardtii chloroplast 70S ribosome in non-translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55461:
In-cell structure of light-treated chlL-deleted C.reinhardtii chloroplast 70S ribosome in translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55462:
In-cell structure of light-treated chlL-deleted C.reinhardtii chloroplast 70S ribosome in non-translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55463:
In-cell structure of dark-treated wild-type C.reinhardtii chloroplast 70S ribosome in translation state
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55464:
In-cell structure of chlL-deleted C.reinhardtii chloroplast F-ATPase
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55465:
In-cell structure of chlL-deleted C.reinhardtii cytoplasmic 80S ribosome
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-55466:
In-cell structure of chlL-deleted C.reinhardtii RuBisCo
Method: subtomogram averaging / : Hou Z, Zhang P

EMDB-72409:
Metabotropic Glutamate Receptor 7 in complex with ecto-domain of Extracellular Leucine Rich Repeat and Fibronectin Type III Domain Containing 2
Method: single particle / : Ludlam WG, Chang CT, Liauw BW, Cho HJ, Sawh-Gopal A, Izard T, Bao H, Dunn HA, Vafabakhsh R, Martemyanov KA

PDB-9y2f:
Metabotropic Glutamate Receptor 7 in complex with ecto-domain of Extracellular Leucine Rich Repeat and Fibronectin Type III Domain Containing 2
Method: single particle / : Ludlam WG, Chang CT, Liauw BW, Cho HJ, Sawh-Gopal A, Izard T, Bao H, Dunn HA, Vafabakhsh R, Martemyanov KA

EMDB-72694:
Cryo-EM structure of wild-type human CNNM4 tetramer with Magnesium and MgATP in outward-facing state
Method: single particle / : Bai Z, Zhou E, Lu W, Du J

EMDB-72696:
Cryo-EM structure of human CNNM4(D262C) tetramer with Magnesium and MgATP in occluded state
Method: single particle / : Bai Z, Zhou E, Lu W, Du J

EMDB-72697:
Cryo-EM structure of human CNNM4(K113A/R140A/R141A) tetramer with Magnesium and MgATP in outward-facing state
Method: single particle / : Bai Z, Zhou E, Lu W, Du J

EMDB-75682:
Cryo-EM structure of human CNNM4(E284A) tetramer with Magnesium and MgATP in outward-facing state
Method: single particle / : Bai Z, Zhou XE, Lu W, Du J

PDB-11gq:
Cryo-EM structure of human CNNM4(E284A) tetramer with Magnesium and MgATP in outward-facing state
Method: single particle / : Bai Z, Zhou XE, Lu W, Du J

PDB-9y9d:
Cryo-EM structure of wild-type human CNNM4 tetramer with Magnesium and MgATP in outward-facing state
Method: single particle / : Bai Z, Zhou E, Lu W, Du J

PDB-9y9f:
Cryo-EM structure of human CNNM4(D262C) tetramer with Magnesium and MgATP in occluded state
Method: single particle / : Bai Z, Zhou E, Lu W, Du J

PDB-9y9g:
Cryo-EM structure of human CNNM4(K113A/R140A/R141A) tetramer with Magnesium and MgATP in outward-facing state
Method: single particle / : Bai Z, Zhou E, Lu W, Du J

EMDB-70719:
cryoEM structure of IRAK4:KT-474:CRBN-DDB1 ternary complex
Method: single particle / : Fei X, Ramanathan A, Diagle C, Ford M, Campbell V, Zheng X, Li H, Sintchak M, Kamadurai H, Miller R, Kazmirski S, Huang X, Weiss M, Manolfi N, Zhu X

PDB-9opj:
cryoEM structure of IRAK4:KT-474:CRBN-DDB1 ternary complex
Method: single particle / : Fei X, Ramanathan A, Diagle C, Ford M, Campbell V, Zheng X, Li H, Sintchak M, Kamadurai H, Miller R, Kazmirski S, Huang X, Weiss M, Manolfi N, Zhu X

EMDB-55135:
Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-55136:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-55137:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-55139:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-55636:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9sra:
Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9srb:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9src:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9sre:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

PDB-9t7h:
Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (L1 stalk conformation)
Method: single particle / : Madru CM, Bourgeois GB, Mechulam YM, Schmitt ES

EMDB-71850:
Sheet-like aggregate from 20 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71851:
Sheet-like aggregate from 20 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71852:
Mitochondria with amorphous calcium phosphate granules from 1 DIV embryonic rat cortical neurons.
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71853:
Sheet-like aggregate from 1 DIV embryonic rat cortical neurons.
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71859:
Sheet-like aggregate from 1 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71860:
Sheet-like aggregate from 1 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71861:
Sheet-like aggregate from 1 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71862:
Sheet-like aggregate from 20 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71863:
Sheet-like aggregate from 20 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-71864:
Sheet-like aggregate from 20 DIV embryonic rat cortical neurons
Method: electron tomography / : Anderson EA, Ludtke SJ

EMDB-77343:
Cryo-EM global density map of BA.1-S/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

EMDB-77344:
Structure of BA.1-S-RBD/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

EMDB-77347:
Cryo-EM global density map of BA.4-S/Ab#10-M30W-S94M IgG
Method: single particle / : Du J, Pallesen J

EMDB-77348:
Structure of BA.4-S-RBD/Ab#10-M30W-S94M
Method: single particle / : Du J, Pallesen J

PDB-36az:
Structure of BA.1-S-RBD/2130WT/2196-S93Y
Method: single particle / : Du J, Pallesen J

PDB-36bb:
Structure of BA.4-S-RBD/Ab#10-M30W-S94M
Method: single particle / : Du J, Pallesen J

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