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Showing all 46 items for (author: dougherty & m)

EMDB-22190:
Subtomogram averaging map of yeast polysome
Method: electron tomography / : Kastritis PL

EMDB-22196:
Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Method: single particle / : Zhou Y, Bartesaghi A

EMDB-22197:
Cryo-EM Structure of K63R Ubiquitin Mutant Consensus Ribosome under Oxidative Stress
Method: single particle / : Zhou Y, Bartesaghi A, Silva GM

EMDB-22198:
Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
Method: single particle / : Zhou Y, Bartesaghi A

PDB-6xiq:
Cryo-EM Structure of K63R Ubiquitin Mutant Ribosome under Oxidative Stress
Method: single particle / : Zhou Y, Bartesaghi A, Silva GM

PDB-6xir:
Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress
Method: single particle / : Zhou Y, Bartesaghi A, Silva GM

EMDB-6748:
Representative tomogram for the Trypanosoma brucei mini cell
Method: electron tomography / : Sun SY, Kaelber JT, Chen M, Shi J, Schmid MF, Chiu W, He CY

EMDB-6749:
Representative tomogram for the Trypanosoma brucei zoid cell with flagellar wave
Method: electron tomography / : Sun SY, Kaelber JT, Chen M, Shi J, Schmid MF, Chiu W, He CY

EMDB-6750:
Representative tomogram for the Trypanosoma brucei zoid cell without flagellar wave
Method: electron tomography / : Sun SY, Kaelber JT, Chen M, Shi J, Schmid MF, Chiu W, He CY

EMDB-5585:
Electron cryo-microscopy of Haliotis diversicolor molluscan hemocyanin isoform 1 (HdH1)
Method: single particle / : Zhang Q, Dai X, Cong Y, Zhang J, Chen DH, Dougherty M, Wang J, Ludtke S, Schmid MF, Chiu W

EMDB-5586:
An asymmetric unit map from Electron cryo-microscopy of Haliotis diversicolor molluscan hemocyanin isoform 1 (HdH1)
Method: single particle / : Zhang Q, Dai X, Cong Y, Zhang J, Chen DH, Dougherty M, Wang J, Ludtke S, Schmid MF, Chiu W

PDB-3j32:
An asymmetric unit map from electron cryo-microscopy of Haliotis diversicolor molluscan hemocyanin isoform 1 (HdH1)
Method: single particle / : Zhang Q, Dai X, Cong Y, Zhang J, Chen DH, Dougherty M, Wang J, Ludtke S, Schmid MF, Chiu W

PDB-4a0o:
Symmetry-free cryo-EM map of TRiC in the nucleotide-free (apo) state
Method: single particle / : Cong Y, Schroder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W

PDB-4a0v:
model refined against the Symmetry-free cryo-EM map of TRiC-AMP-PNP
Method: single particle / : Cong Y, Schroder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W

PDB-4a0w:
model built against symmetry-free cryo-EM map of TRiC-ADP-AlFx
Method: single particle / : Cong Y, Schroder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W

PDB-4a13:
model refined against symmetry-free cryo-EM map of TRiC-ADP
Method: single particle / : Cong Y, Schroder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W

EMDB-1960:
Symmetry-free cryo-EM map of TRiC in the nucleotide-free (apo) state
Method: single particle / : Cong Y, Schroder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W

EMDB-1961:
Symmetry-free cryo-EM map of TRiC-AMP-PNP
Method: single particle / : Cong Y, Schroder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W

EMDB-1962:
Symmetry-free cryo-EM map of TRiC-ADP-AlFx
Method: single particle / : Cong Y, Schroder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W

EMDB-1963:
Symmetry-free cryo-EM map of TRiC-ADP
Method: single particle / : Cong Y, Schroder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W

PDB-2xyy:
De Novo model of Bacteriophage P22 procapsid coat protein
Method: single particle / : Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W

PDB-2xyz:
De Novo model of Bacteriophage P22 virion coat protein
Method: single particle / : Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W

EMDB-1824:
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus
Method: single particle / : Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W

EMDB-1825:
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus
Method: single particle / : Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W

EMDB-1826:
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus
Method: single particle / : Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W

EMDB-1827:
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus
Method: single particle / : Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W

EMDB-1828:
Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus
Method: single particle / : Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W

EMDB-1648:
Assembly and Allosteric Mechanism of Molluscan Hemocyanin Revealed by Cryo-EM Structure and Pseudo-atomic Model
Method: single particle / : Xinghong D, Junjie Z, Jiangyong W, Kunpeng L, Donghua C, Qinfen Z, Wah C

EMDB-1707:
Structural Changes in a Marine Podovirus Associated with Viral Genome Release into Prochlorococcus
Method: subtomogram averaging / : Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty M, Schmid MF, Osburne MS, Chisholm SW, Chiu W

PDB-2xd8:
Capsid structure of the infectious Prochlorococcus Cyanophage P-SSP7
Method: single particle / : Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty M, Schmid MF, Osburne MS, Chisholm SW, Chiu W

EMDB-1714:
Asymmetric structure of the empty Prochlorococcus Cyanophage P-SSP7
Method: single particle / : Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty M, Schmid MF, Osburne MS, Chisholm SW, Chiu W

EMDB-1715:
Asymmetric structure of the infectious Prochlorococcus Cyanophage P-SSP7
Method: single particle / : Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty M, Schmid MF, Osburne MS, Chisholm SW, Chiu W

EMDB-1713:
Capsid structure of the infectious Prochlorococcus Cyanophage P-SSP7
Method: single particle / : Liu X, Zhang Q, Murata K, Baker ML, Sullivan MB, Fu C, Dougherty M, Schmid MF, Osburne MS, Chisholm SW, Chiu W

PDB-3los:
Atomic Model of Mm-cpn in the Closed State
Method: single particle / : Zhang J, Baker ML, Schroeder G, Douglas NR, Reissmann S, Jakana J, Dougherty M, Fu CJ, Levitt M, Ludtke SJ, Frydman J, Chiu W

EMDB-5137:
Wildtype Mm-cpn in the closed state
Method: single particle / : Zhang J, Baker ML, Schroeder G, Douglas NR, Reissmann S, Jakana J, Dougherty M, Fu CJ, Levitt M, Ludtke SJ, Frydman J, Chiu W

EMDB-5138:
Lidless Mm-cpn in the closed state
Method: single particle / : Zhang J, Baker ML, Schroeder G, Douglas NR, Reissmann S, Jakana J, Dougherty M, Fu CJ, Levitt M, Ludtke SJ, Frydman J, Chiu W

EMDB-5139:
Wildtype Mm-cpn in the open state
Method: single particle / : Zhang J, Baker ML, Schroeder G, Douglas NR, Reissmann S, Jakana J, Dougherty M, Fu CJ, Levitt M, Ludtke SJ, Frydman J, Chiu W

EMDB-5140:
Lidless Mm-cpn in the open state
Method: single particle / : Zhang J, Baker ML, Schroeder G, Douglas NR, Reissmann S, Jakana J, Dougherty M, Fu CJ, Levitt M, Ludtke SJ, Frydman J, Chiu W

PDB-3iyf:
Atomic Model of the Lidless Mm-cpn in the Open State
Method: single particle / : Zhang J, Baker ML, Schroeder G, Douglas NR, Reissmann S, Jakana J, Dougherty M, Fu CJ, Levitt M, Ludtke SJ, Frydman J, Chiu W

PDB-3ixv:
Scorpion Hemocyanin resting state pseudo atomic model built based on cryo-EM density map
Method: single particle / : Cong Y, Zhang Q, Woolford D, Schweikardt T, Khant H, Ludtke S, Chiu W, Decker H

PDB-3ixw:
Scorpion Hemocyanin activated state pseudo atomic model built based on cryo-EM density map
Method: single particle / : Cong Y, Zhang Q, Woolford D, Schweikardt T, Khant H, Ludtke S, Chiu W, Decker H

EMDB-5100:
24-meric Scorpion Hemocyanin Resting State cryo-EM Density Map at 6.8 Angstrom Resolution
Method: single particle / : Cong Y, Zhang Q, Woolford D, Schweikardt T, Khant H, Ludtke S, Chiu W, Decker H

EMDB-5101:
24-meric Scorpion Hemocyanin Activated State cryo-EM Density Map at 8 Angstrom Resolution
Method: single particle / : Cong Y, Zhang Q, Woolford D, Schweikardt T, Khant H, Ludtke S, Chiu W, Decker H

PDB-3b63:
Actin filament model in the extended form of acromsomal bundle in the Limulus sperm
Method: electron crystallography / : Cong Y, Topf M, Sali A, Matsudaira P, Dougherty M, Chiu W, Schmid MF

PDB-3b5u:
Actin filament model from extended form of acromsomal bundle in the Limulus sperm
Method: electron crystallography / : Cong Y, Topf M, Sali A, Matsudaira P, Dougherty M, Chiu W, Schmid MF

EMDB-1060:
Electron cryomicroscopy and bioinformatics suggest protein fold models for rice dwarf virus.
Method: single particle / : Zhou ZH, Baker ML, Jiang W, Dougherty M, Jakana J, Dong G, Lu G, Chiu W

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

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