[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 127 items for (author: doudna & j)

EMDB-48856:
70S Ribosome of Goslar infected WT E. coli
Method: subtomogram averaging / : Klusch N, Villa E

EMDB-48875:
70S Ribosome of Goslar infected chmA KD E. coli
Method: subtomogram averaging / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-48876:
70S Ribosome of Goslar infected chmA KD E. coli
Method: subtomogram averaging / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-49120:
In situ cryoET of an EPI vesicle in a Goslar infected chmA KD E. coli cell 90 mpi
Method: electron tomography / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-49121:
In situ cryoET of an EPI vesicle in a Goslar infected chmA KD E. coli cell 90 mpi
Method: electron tomography / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-49122:
In situ cryoET of an EPI vesicle in a Goslar infected chmA KD E. coli cell 30 mpi
Method: electron tomography / : Klusch N, Villa E

EMDB-49123:
In situ cryoET of an EPI vesicle in a Goslar infected WT E. coli cell 1 mpi
Method: electron tomography / : Klusch N, Villa E

EMDB-47705:
Tomogram of Cas9 containing Enveloped Delivery Vehicles (EDVs)
Method: electron tomography / : Peukes J, Ngo W, Nogales E, Doudna J

EMDB-47741:
Tomogram of Enveloped Delivery Vehicles (EDVs) without Cas9
Method: electron tomography / : Peukes J, Ngo W, Nogales E, Doudna J

EMDB-47743:
Subtomogram average of capsid (CA) from immature Enveloped Delivery Vehicles (EDVs) without Cas9
Method: subtomogram averaging / : Peukes J, Ngo W, Nogales E, Doudna J

EMDB-47745:
Subtomogram average of capsid (CA) from immature Enveloped Delivery Vehicles (EDVs) containing Cas9
Method: subtomogram averaging / : Peukes J, Ngo W, Nogales E, Doudna J

EMDB-47858:
Tomogram of a minimized Enveloped Delivery Vehicle (miniEDV)
Method: electron tomography / : Peukes J, Ngo W, Nogales E, Doudna J

EMDB-45631:
Cas12a:gRNA:DNA (Acidaminococcus sp.) with 0 RNA:DNA base pairs, structure 1
Method: single particle / : Soczek KM, Doudna JA

EMDB-45632:
Cas12a:gRNA:DNA (Acidaminococcus sp.) with 0 RNA:DNA base pairs, structure 2
Method: single particle / : Soczek KM, Doudna JA

EMDB-45633:
Cas12a:gRNA:DNA (Acidaminococcus sp.) with 0 RNA:DNA base pairs, structure 3
Method: single particle / : Soczek KM, Doudna JA

PDB-9cjh:
Cas12a:gRNA:DNA (Acidaminococcus sp.) with 0 RNA:DNA base pairs, structure 1
Method: single particle / : Soczek KM, Doudna JA

PDB-9cji:
Cas12a:gRNA:DNA (Acidaminococcus sp.) with 0 RNA:DNA base pairs, structure 2
Method: single particle / : Soczek KM, Doudna JA

PDB-9cjj:
Cas12a:gRNA:DNA (Acidaminococcus sp.) with 0 RNA:DNA base pairs, structure 3
Method: single particle / : Soczek KM, Doudna JA

EMDB-42837:
Cryo-EM structure of GeoCas9 in complex with sgRNA and target DNA
Method: single particle / : Eggers AR, Soczek KM, Tuck OT, Doudna JA

EMDB-42838:
Cryo-EM structure of iGeoCas9 in complex with sgRNA and target DNA
Method: single particle / : Eggers AR, Soczek KM, Tuck OT, Doudna JA

PDB-8uza:
Cryo-EM structure of GeoCas9 in complex with sgRNA and target DNA
Method: single particle / : Eggers AR, Soczek KM, Tuck OT, Doudna JA

PDB-8uzb:
Cryo-EM structure of iGeoCas9 in complex with sgRNA and target DNA
Method: single particle / : Eggers AR, Soczek KM, Tuck OT, Doudna JA

EMDB-43613:
Structure of HamAB apo complex from the Escherichia coli Hachiman defense system
Method: single particle / : Tuck OT, Doudna JA

EMDB-43615:
Structure of HamB-DNA complex, conformation 1, from the Escherichia coli Hachiman defense system
Method: single particle / : Tuck OT, Doudna JA

EMDB-43616:
Structure of HamB-DNA complex, conformation 2, from the Escherichia coli Hachiman defense system
Method: single particle / : Tuck OT, Doudna JA

EMDB-43643:
Structure of HamA(E138A,K140A)B-plasmid DNA complex from the Escherichia coli Hachiman defense system
Method: single particle / : Tuck OT, Hu JJ, Doudna JA

PDB-8vx9:
Structure of HamAB apo complex from the Escherichia coli Hachiman defense system
Method: single particle / : Tuck OT, Doudna JA

PDB-8vxa:
Structure of HamB-DNA complex, conformation 1, from the Escherichia coli Hachiman defense system
Method: single particle / : Tuck OT, Doudna JA

PDB-8vxc:
Structure of HamB-DNA complex, conformation 2, from the Escherichia coli Hachiman defense system
Method: single particle / : Tuck OT, Doudna JA

PDB-8vxy:
Structure of HamA(E138A,K140A)B-plasmid DNA complex from the Escherichia coli Hachiman defense system
Method: single particle / : Tuck OT, Hu JJ, Doudna JA

EMDB-29561:
Cryo-EM structure of Cas1:Cas2-DEDDh:PAM-deficient prespacer complex
Method: single particle / : Skopintsev P, Tuck OT, Soczek KM, Doudna J

EMDB-29562:
Cryo-EM structure of Cas1:Cas2-DEDDh:PAM-containing prespacer complex
Method: single particle / : Skopintsev P, Tuck OT, Soczek KM, Doudna J

EMDB-29563:
Cryo-EM structure of Cas1:Cas2-DEDDh:half-site integration complex
Method: single particle / : Skopintsev P, Tuck OT, Soczek KM, Doudna J

EMDB-29564:
Cryo-EM structure of Cas1:Cas2-DEDDh:half-site integration complex linear CRISPR repeat conformation
Method: single particle / : Skopintsev P, Tuck OT, Soczek KM, Doudna J

EMDB-29565:
Cryo-EM structure of Cas1:Cas2-DEDDh:half-site integration complex bent CRISPR repeat conformation
Method: single particle / : Skopintsev P, Tuck OT, Soczek KM, Doudna J

PDB-8fy9:
Cryo-EM structure of Cas1:Cas2-DEDDh:PAM-deficient prespacer complex
Method: single particle / : Skopintsev P, Tuck OT, Soczek KM, Doudna J

PDB-8fya:
Cryo-EM structure of Cas1:Cas2-DEDDh:PAM-containing prespacer complex
Method: single particle / : Skopintsev P, Tuck OT, Soczek KM, Doudna J

PDB-8fyb:
Cryo-EM structure of Cas1:Cas2-DEDDh:half-site integration complex
Method: single particle / : Skopintsev P, Tuck OT, Soczek KM, Doudna J

PDB-8fyc:
Cryo-EM structure of Cas1:Cas2-DEDDh:half-site integration complex linear CRISPR repeat conformation
Method: single particle / : Skopintsev P, Tuck OT, Soczek KM, Doudna J

PDB-8fyd:
Cryo-EM structure of Cas1:Cas2-DEDDh:half-site integration complex bent CRISPR repeat conformation
Method: single particle / : Skopintsev P, Tuck OT, Soczek KM, Doudna J

EMDB-27320:
Cryo-EM structure of CasLambda (Cas12l) bound to crRNA and DNA
Method: single particle / : Al-Shayeb B, Skopintsev P, Soczek K, Doudna J

PDB-8dc2:
Cryo-EM structure of CasLambda (Cas12l) bound to crRNA and DNA
Method: single particle / : Al-Shayeb B, Skopintsev P, Soczek K, Doudna J

EMDB-24817:
Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, closed-protein/bent-DNA conformation
Method: single particle / : Cofsky JC, Soczek KM

EMDB-24818:
Cas9:sgRNA (S. pyogenes) in the open-protein conformation
Method: single particle / : Cofsky JC, Soczek KM

EMDB-24819:
Cas9:sgRNA:DNA (S. pyogenes) forming a 3-base-pair R-loop
Method: single particle / : Cofsky JC, Soczek KM

EMDB-24823:
Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, open-protein/linear-DNA conformation
Method: single particle / : Cofsky JC, Soczek KM

PDB-7s36:
Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, closed-protein/bent-DNA conformation
Method: single particle / : Cofsky JC, Soczek KM, Knott GJ, Nogales E, Doudna JA

PDB-7s37:
Cas9:sgRNA (S. pyogenes) in the open-protein conformation
Method: single particle / : Cofsky JC, Soczek KM, Knott GJ, Nogales E, Doudna JA

PDB-7s38:
Cas9:sgRNA:DNA (S. pyogenes) forming a 3-base-pair R-loop
Method: single particle / : Cofsky JC, Soczek KM, Knott GJ, Nogales E, Doudna JA

PDB-7s3h:
Cas9:sgRNA:DNA (S. pyogenes) with 0 RNA:DNA base pairs, open-protein/linear-DNA conformation
Method: single particle / : Cofsky JC, Soczek KM, Knott GJ, Nogales E, Doudna JA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more