[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 922 items for (author: chen & hy)

EMDB-70143:
Cryo-EM structure of human SWELL1-PSA heterocomplex
Method: single particle / : Hagino T, Twomey EC, Qiu Z

EMDB-63944:
Microtubule doublet from wild-type mouse tracheal epithelial cells
Method: subtomogram averaging / : Zhang Y, Ni T, He M, Park HJ, Choi MJ, Cheung HO

EMDB-63946:
microtubule doublet from Kif27-/- mouse tracheal epithelial cells
Method: subtomogram averaging / : Zhang Y, Ni T, He M, Park HJ, Choi MJ, Cheung HO

EMDB-71899:
Structure of V30V4 in complex with SARS-CoV-2 spike
Method: single particle / : Wang YJ, Kibria G, Wesemann D, Chen B

PDB-9pw4:
Structure of V30V4 in complex with SARS-CoV-2 spike
Method: single particle / : Wang YJ, Kibria G, Wesemann D, Chen B

EMDB-71900:
The local refinement map of Structure of V30V4 in complex with SARS-CoV-2 spike
Method: single particle / : Wang YJ, Kibria G, Wesemann D, Chen B

EMDB-60996:
Cryo-EM structure of an amyloid fibril formed by SOD1 mutant - G93A
Method: helical / : Zhang MY, Ma YY, Wang LQ, Xia WC, Yuan HY, Zhao K, Chen J, Li D, Zou LY, Wang ZZ, Liu C, Liang Y

EMDB-60998:
Cryo-EM structure of an amyloid fibril formed by SOD1 mutant - D101N
Method: helical / : Zhang MY, Ma YY, Wang LQ, Xia WC, Yuan HY, Zhao K, Chen J, Li D, Zou LY, Wang ZZ, Liu C, Liang Y

EMDB-62800:
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with Ace2 constituent map 1
Method: single particle / : Hsu HF, Wu MH, Chang YC, Hsu STD

EMDB-62810:
Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with ACE2 constituent map 2
Method: single particle / : Hsu HF, Wu MH, Chang YC, Hsu STD

EMDB-71513:
SARS-CoV-2 Wuhan-Hu-1/BA.1 spike heterotrimer (HT2) with 3-'down' RBDs
Method: single particle / : Fan C, Dam KA, Bjorkman PJ

EMDB-71514:
SARS-CoV-2 Wuhan-Hu-1/BA.1 spike heterotrimer (HT2) with 1-'up' RBD
Method: single particle / : Fan C, Dam KA, Bjorkman PJ

EMDB-71515:
SARS-CoV-2 Wuhan-Hu-1/BA.1/Delta spike heterotrimer (HT3) with 3-'down' RBDs
Method: single particle / : Fan C, Dam KA, Bjorkman PJ

EMDB-71516:
SARS-CoV-2 Wuhan-Hu-1/BA.1/Delta spike heterotrimer (HT3) with 1-'up' RBD
Method: single particle / : Fan C, Dam KA, Bjorkman PJ

EMDB-44724:
SARS-CoV-2 spike HexaPro protein in complex with T0A trimeric antagonist
Method: single particle / : Young T

EMDB-44725:
SARS-CoV-2 spike HexaPro protein in complex with T3A trimeric antagonist
Method: single particle / : Young T

EMDB-44726:
SARS-CoV-2 spike HexaPro protein in complex with T5A trimeric antagonist
Method: single particle / : Young T

EMDB-44727:
SARS-CoV-2 spike HexaPro protein in complex with T18A trimeric antagonist
Method: single particle / : Young T

PDB-9bnd:
SARS-CoV-2 spike HexaPro protein in complex with T0A trimeric antagonist
Method: single particle / : Young T

PDB-9bne:
SARS-CoV-2 spike HexaPro protein in complex with T3A trimeric antagonist
Method: single particle / : Young T

PDB-9bnf:
SARS-CoV-2 spike HexaPro protein in complex with T5A trimeric antagonist
Method: single particle / : Young T

PDB-9bng:
SARS-CoV-2 spike HexaPro protein in complex with T18A trimeric antagonist
Method: single particle / : Young T

EMDB-49231:
Open conformation of ArsA from L. ferriphilum in complex with MgADP determined in the presence of arsenite
Method: single particle / : Mahajan S, Rees DC, Clemons WM

EMDB-49232:
Open conformation of ArsA from L. ferriphilum in complex with MgADP determined in absence of arsenite
Method: single particle / : Mahajan S, Rees DC, Clemons WM

EMDB-49233:
Open conformation of ArsA from L. ferriphilum in presence of MgATP
Method: single particle / : Mahajan S, Rees DC, Clemons WM

EMDB-49234:
Closed conformation of ArsA from L. ferriphilum in complex with MgATP and arsenite
Method: single particle / : Mahajan S, Li YE, Rees DC, Clemons WM

EMDB-49237:
Closed conformation of ArsA from L. ferriphilum in complex with MgATP and arsenite at 1.5 minute time point
Method: single particle / : Mahajan S, Rees DC, Clemons WM

PDB-9nbl:
Open conformation of ArsA from L. ferriphilum in complex with MgADP determined in the presence of arsenite
Method: single particle / : Mahajan S, Rees DC, Clemons WM

PDB-9nbm:
Open conformation of ArsA from L. ferriphilum in complex with MgADP determined in absence of arsenite
Method: single particle / : Mahajan S, Rees DC, Clemons WM

PDB-9nbo:
Closed conformation of ArsA from L. ferriphilum in complex with MgATP and arsenite
Method: single particle / : Mahajan S, Li YE, Rees DC, Clemons WM

PDB-9nbw:
Closed conformation of ArsA from L. ferriphilum in complex with MgATP and arsenite at 1.5 minute time point
Method: single particle / : Mahajan S, Rees DC, Clemons WM

EMDB-70961:
Cryo-EM structure of S. Mansoni p97 bound to CB-5083
Method: single particle / : Stephens DR, Han Y, Chen Z, Collins JJ, Fung HYJ

EMDB-71062:
Cryo-EM structure of apo S. Mansoni p97
Method: single particle / : Stephens DR, Han Y, Chen Z, Collins JJ, Fung HYJ

EMDB-71063:
Cryo-EM structure of S. Mansoni p97 bound to ATPgS
Method: single particle / : Stephens DR, Han Y, Chen Z, Collins JJ, Fung HYJ

EMDB-71064:
Cryo-EM structure of S. Mansoni p97 bound to compound 739
Method: single particle / : Stephens DR, Han Y, Chen Z, Liang J, Ready J, Collins JJ, Fung HYJ

EMDB-71066:
Cryo-EM structure of S. Mansoni p97 bound to compound 804
Method: single particle / : Stephens DR, Han Y, Chen Z, Liang J, Ready J, Collins JJ, Fung HYJ

EMDB-70838:
Rabbit 37496 base and V1/V3 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70839:
Rabbit 37496 base and gp41-GH epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70840:
Rabbit 37496 base and gp120-GH epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70846:
Rabbit 37496 base and C3V5 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70847:
Rabbit 37450 base, gp41-FP and gp120int epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70848:
Rabbit 37442 base and gp120int epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70852:
NHP RJh18 base epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70855:
NHP RUv18 base epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70858:
NHP RUv18 V1/V3 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-70860:
NHP REy18 base and V1/V3 epitope polyclonal Fabs in complex with BG505 MD39.3 SOSIP
Method: single particle / : Ozorowski G, Torres JL, Jackson AM, Ward AB

EMDB-48523:
RM017 Fab in complex with Apex-GT6.2 trimer and RM20A3 Fab
Method: single particle / : Pratap PP, Ozorowski G, Ward AB

PDB-9mqg:
RM017 Fab in complex with Apex-GT6.2 trimer and RM20A3 Fab
Method: single particle / : Pratap PP, Ozorowski G, Ward AB

EMDB-44341:
RM038 Fab in complex with Apex-GT 6.2 trimer and RM20A3 Fab
Method: single particle / : Pratap PP, Ozorowski G, Ward AB

EMDB-44342:
RM018 Fab in complex with Apex GT 6.2 trimer and RM20A3 Fab
Method: single particle / : Pratap PP, Ozorowski G, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more