[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 91 items for (author: bukreyev & a)

EMDB-46892:
Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
Method: single particle / : Yu X, Saphire EO

PDB-9dhy:
Structure of SARS-CoV-2 spike in complex with antibody Fab COVIC-154
Method: single particle / : Yu X, Saphire EO

EMDB-43794:
COVA2-15 fragment antigen binding in complex with SARS-CoV-2 6P-mut7 S protein
Method: single particle / : Ozorowski G, Turner HL, Ward AB

PDB-9aru:
COVA2-15 fragment antigen binding in complex with SARS-CoV-2 6P-mut7 S protein
Method: single particle / : Ozorowski G, Turner HL, Ward AB

EMDB-43139:
SARS-CoV-2 Spike S2 bound to Fab 54043-5
Method: single particle / : Johnson NV, McLellan JS

PDB-8vcr:
SARS-CoV-2 Spike S2 bound to Fab 54043-5
Method: single particle / : Johnson NV, McLellan JS

EMDB-26735:
Hantavirus ANDV Gn(H) protein in complex with 2 Fabs ANDV-5 and ANDV-34
Method: single particle / : Binshtein E, Crowe JE

EMDB-26736:
Hantavirus MAPV Gn(H)/Gc protein in complex with 2 Fabs SNV-24 and SNV-53
Method: single particle / : Binshtein E, Crowe JE

EMDB-27318:
CryoEM structure of Hantavirus ANDV Gn(H) protein complex with 2Fabs ANDV-5 and ANDV-34
Method: single particle / : Binshtein E, Crowe JE

PDB-8dbz:
CryoEM structure of Hantavirus ANDV Gn(H) protein complex with 2Fabs ANDV-5 and ANDV-34
Method: single particle / : Binshtein E, Crowe JE

EMDB-25107:
Lassa virus glycoprotein construct(Josiah GPCysR4) recovered from GPC-I53-50 nanoparticle by localized reconstruction
Method: single particle / : Antanasijevic A, Brouwer PJM

EMDB-25108:
I53-50 nanoparticle core reconstructed from GPC-I53-50NP by focused refinement
Method: single particle / : Antanasijevic A, Brouwer PJM

EMDB-25109:
Lassa virus glycoprotein construct (Josiah GPC-I53-50A) in complex with LAVA01 antibody
Method: single particle / : Antanasijevic A, Brouwer PJM

PDB-7sgd:
Lassa virus glycoprotein construct(Josiah GPCysR4) recovered from GPC-I53-50 nanoparticle by localized reconstruction
Method: single particle / : Antanasijevic A, Brouwer PJM, Ward AB

PDB-7sge:
I53-50 nanoparticle core reconstructed from GPC-I53-50NP by focused refinement
Method: single particle / : Antanasijevic A, Brouwer PJM, Ward AB

PDB-7sgf:
Lassa virus glycoprotein construct (Josiah GPC-I53-50A) in complex with LAVA01 antibody
Method: single particle / : Antanasijevic A, Brouwer PJM, Ward AB

EMDB-25618:
SARS-CoV-2 VFLIP spike boung to 2 Ab12 Fab fragments
Method: single particle / : Olmedillas E, Ollmann-Saphire E

EMDB-25663:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, composite map
Method: single particle / : Byrne PO, McLellan JS

EMDB-25689:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, global map with poorly-resolved RBDs and scFvs
Method: single particle / : Byrne PO, McLellan JS

EMDB-25690:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, local refinement map
Method: single particle / : Byrne PO, McLellan JS

EMDB-25711:
SARS-CoV-2 S (Spike Glycoprotein) D614G with One(1) RBD Up
Method: single particle / : Byrne PO, McLellan JS

PDB-7t3m:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, composite map
Method: single particle / : Byrne PO, McLellan JS

PDB-7t67:
SARS-CoV-2 S (Spike Glycoprotein) D614G with One(1) RBD Up
Method: single particle / : Byrne PO, McLellan JS

EMDB-25574:
SARS-CoV-2 S-RBD + Fab 54042-4
Method: single particle / : Johnson NV, Mclellan JS

PDB-7t01:
SARS-CoV-2 S-RBD + Fab 54042-4
Method: single particle / : Johnson NV, Mclellan JS

EMDB-25471:
Structure of EBOV GP lacking the mucin-like domain with 1C11 scFv and 1C3 Fab bound
Method: single particle / : Milligan JC, Yu X

PDB-7swd:
Structure of EBOV GP lacking the mucin-like domain with 1C11 scFv and 1C3 Fab bound
Method: single particle / : Milligan JC, Yu X, Saphire EO

EMDB-26064:
SARS-CoV-2 S + Fabs 5317-4 and 5217-10
Method: single particle / : Johnson NV, McLellan JS

EMDB-23719:
EBOV GP bound to rEBOV-442 and rEBOV-515 Fabs
Method: single particle / : Murin CD, Ward AB

PDB-7m8l:
EBOV GP bound to rEBOV-442 and rEBOV-515 Fabs
Method: single particle / : Murin CD, Ward AB

EMDB-22839:
BDBV-289 bound to EBOV GPdMuc Makona
Method: single particle / : Murin CD, Ward AB

PDB-7kej:
BDBV-289 bound to EBOV GPdMuc Makona
Method: single particle / : Murin CD, Ward AB

EMDB-22841:
Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-43 and ADI-15878
Method: single particle / : Murin CD, Ward AB

EMDB-22842:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-293
Method: single particle / : Murin CD, Ward AB

EMDB-22847:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-296 and EBOV-515
Method: single particle / : Murin CD, Ward AB

EMDB-22848:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-442 and EBOV-515
Method: single particle / : Murin CD, Ward AB

EMDB-22851:
Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-329 and EBOV-515
Method: single particle / : Murin CD, Ward AB

EMDB-22852:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-237 and EBOV-515
Method: single particle / : Murin CD, Ward AB

EMDB-22853:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-437 and EBOV-515
Method: single particle / : Murin CD, Ward AB

PDB-7kew:
Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-43
Method: single particle / : Murin CD, Ward AB

PDB-7kex:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-293
Method: single particle / : Murin CD, Ward AB

PDB-7kf9:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-296 and EBOV-515
Method: single particle / : Murin CD, Ward AB

PDB-7kfb:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-442
Method: single particle / : Murin CD, Ward AB

PDB-7kfe:
Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-329
Method: single particle / : Murin CD, Ward AB

PDB-7kfh:
Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-437
Method: single particle / : Murin CD, Ward AB

EMDB-20293:
EBOV GPdTM (Mayinga) in complex with rEBOV-548 Fab
Method: single particle / : Ward AB, Turner HL, Murin CD

EMDB-20301:
EBOV GPdMuc (Makona) in complex with rEBOV-520 and rEBOV-548 Fabs
Method: single particle / : Ward AB, Murin CD

EMDB-20947:
EBOV GPdMuc Makona bound to rEBOV-548 Fab
Method: single particle / : Murin CD, Ward AB

PDB-6pci:
EBOV GPdMuc (Makona) in complex with rEBOV-520 and rEBOV-548 Fabs
Method: single particle / : Ward AB, Murin CD, Alkutkar T

PDB-6uye:
EBOV GPdMuc Makona bound to rEBOV-548 Fab
Method: single particle / : Murin CD, Ward AB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more