[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 80 items for (author: brasch & j)

EMDB-53046:
Mouse otoferlin (216-1931) in complex with an MSP2N2 lipid nanodisc (30 mol% DOPS, 10 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

PDB-9qe2:
Mouse otoferlin (216-1931) in complex with an MSP2N2 lipid nanodisc (30 mol% DOPS, 10 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

EMDB-54802:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-bound state, "open" conformation (class 2)
Method: single particle / : Cretu C, Moser T

EMDB-54805:
Mouse otoferlin (216-1931) in complex with a lipid nanodisc (comprising 25% PS and 5% PIP2)
Method: single particle / : Cretu C, Moser T

EMDB-54809:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "open" conformation (class 1)
Method: single particle / : Cretu C, Moser T

EMDB-54827:
Mouse otoferlin (residues 216-1931) in the lipid-bound state (merged datasets)
Method: single particle / : Cretu C, Moser T

EMDB-54883:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-free state ("loose" conformation)
Method: single particle / : Cretu C, Moser T

EMDB-54923:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "closed-like" conformation
Method: single particle / : Cretu C, Moser T

PDB-9se5:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-bound state, "open" conformation (class 2)
Method: single particle / : Cretu C, Moser T

PDB-9sea:
Mouse otoferlin (216-1931) in complex with a lipid nanodisc (comprising 25% PS and 5% PIP2)
Method: single particle / : Cretu C, Moser T

PDB-9seg:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "open" conformation (class 1)
Method: single particle / : Cretu C, Moser T

PDB-9sfl:
Mouse otoferlin (residues 216-1931) in the lipid-bound state (merged datasets)
Method: single particle / : Cretu C, Moser T

PDB-9sh0:
Mouse otoferlin (216-1931) in the lipid-free, Ca2+-free state ("loose" conformation)
Method: single particle / : Cretu C, Moser T

PDB-9si1:
Mouse otoferlin (216-1931) in the lipid-free Ca2+-bound state, "closed-like" conformation
Method: single particle / : Cretu C, Moser T

EMDB-51902:
Cryo-EM structure of lipid-bound human myoferlin (25 mol% DOPS/5 mol% PI(4,5)P2 nanodisc)
Method: single particle / : Cretu C, Moser T, Preobraschenski J

EMDB-53222:
Human myoferlin (1-1997) in complex with an MSP2N2 lipid nanodisc (15 mol% DOPS, 5 mol% Cholesterol)
Method: single particle / : Cretu C, Moser T

EMDB-53225:
Human myoferlin (1-1997) in complex with an MSP2N2 lipid nanodisc (15 mol% DOPS, 2 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

EMDB-53226:
Human myoferlin (1-1997) in complex with an MSP2N2 lipid nanodisc (25 mol% DOPS, 5 mol% PI(4,5)P2 and 5 mol% Cholesterol)
Method: single particle / : Cretu C, Moser T

EMDB-53229:
Human myoferlin (1-1997) in the lipid-free, Ca2+-bound state
Method: single particle / : Cretu C, Moser T

EMDB-53233:
Human dysferlin (1-2017) in the lipid-free, Ca2+-bound state
Method: single particle / : Cretu C, Moser T

PDB-9h6x:
Cryo-EM structure of lipid-bound human myoferlin (25 mol% DOPS/5 mol% PI(4,5)P2 nanodisc)
Method: single particle / : Cretu C, Moser T, Preobraschenski J

PDB-9qkv:
Human myoferlin (1-1997) in complex with an MSP2N2 lipid nanodisc (15 mol% DOPS, 5 mol% Cholesterol)
Method: single particle / : Cretu C, Moser T

PDB-9qle:
Human myoferlin (1-1997) in complex with an MSP2N2 lipid nanodisc (15 mol% DOPS, 2 mol% PI(4,5)P2)
Method: single particle / : Cretu C, Moser T

PDB-9qlf:
Human myoferlin (1-1997) in complex with an MSP2N2 lipid nanodisc (25 mol% DOPS, 5 mol% PI(4,5)P2 and 5 mol% Cholesterol)
Method: single particle / : Cretu C, Moser T

PDB-9qln:
Human myoferlin (1-1997) in the lipid-free, Ca2+-bound state
Method: single particle / : Cretu C, Moser T

PDB-9qls:
Human dysferlin (1-2017) in the lipid-free, Ca2+-bound state
Method: single particle / : Cretu C, Moser T

EMDB-28233:
Cryo-EM structure of LRP2 at pH 7.5
Method: single particle / : Beenken A, Cerutti G, Brasch J, Fitzpatrick AW, Barasch J, Shapiro L

EMDB-28241:
Cryo-EM structure of LRP2 at pH 5.2
Method: single particle / : Beenken A, Cerutti G, Fitzpatrick AW, Barasch J, Shapiro L

EMDB-28242:
Local refinement map of LRP2 P1-P2 domains at pH 7.5
Method: single particle / : Beenken A, Shapiro L

EMDB-28243:
Local refinement of P3-P6 domains of LRP2 at pH 7.5
Method: single particle / : Beenken A, Shapiro L

EMDB-28250:
Local refinement of the P7 domain of LRP2 at pH 7.5
Method: single particle / : Beenken A, Shapiro L

EMDB-28251:
Local refinement of the R4 domain of LRP2 at pH 7.5
Method: single particle / : Beenken A, Shapiro L

EMDB-28252:
Local refinement of P8 domain of LRP2 at pH 7.5
Method: single particle / : Beenken A, Shapiro L

EMDB-28253:
Local refinement of P1-P2 domains of LRP2 at pH 5.2
Method: single particle / : Beenken A, Shapiro L

EMDB-28258:
Local refinement of P3-P6 domains of LRP2 at pH 5.2
Method: single particle / : Beenken A, Shapiro L

EMDB-28260:
Local refinement of P7 domain of LRP2 at pH 5.2
Method: single particle / : Beenken A, Shapiro L

EMDB-28261:
Local refinement of R3 domain of LRP2 at pH 5.2
Method: single particle / : Beenken A, Shapiro L

EMDB-28265:
Local refinement of P8 domain of LRP2 at pH 5.2
Method: single particle / : Beenken A, Shapiro L

PDB-8em4:
Cryo-EM structure of LRP2 at pH 7.5
Method: single particle / : Beenken A, Cerutti G, Brasch J, Fitzpatrick AW, Barasch J, Shapiro L

PDB-8em7:
Cryo-EM structure of LRP2 at pH 5.2
Method: single particle / : Beenken A, Cerutti G, Fitzpatrick AW, Barasch J, Shapiro L

EMDB-21188:
human delta protocadherin 1 full ectodomains on membranes of liposomes tomogram 1
Method: electron tomography / : Brasch J, Harrisson OJ, Noble AJ, Carragher B, Potter CS, Shapiro LS

EMDB-21189:
human delta protocadherin 1 full ectodomains on membranes tomogram 2
Method: electron tomography / : Brasch J, Harrisson OJ, Noble AJ, Carragher B, Potter CS, Shapiro LS

EMDB-21190:
human delta protocadherin 1 full ectodomains on membranes tomogram 3
Method: electron tomography / : Brasch J, Harrisson OJ, Noble AJ, Carragher B, Potter CS, Shapiro LS

EMDB-21191:
human non-clustered delta protocadherin 10 on membranes tomogram 1
Method: electron tomography / : Brasch J, Harrisson OJ, Noble AJ, Carragher B, Potter CS, Shapiro LS

EMDB-21192:
human non-clustered delta protocadherin 10 on membranes tomogram 2
Method: electron tomography / : Brasch J, Harrison OJ, Noble AJ, Carragher B, Potter CS

EMDB-21193:
human non-clustered delta protocadherin 10 full ectodomains on membranes tomogram 3
Method: electron tomography / : Brasch J, Harrisson OJ, Noble AJ, Carragher B, Potter CS, Shapiro LS

EMDB-20529:
Toll receptor EM map from DoG picks
Method: single particle / : Rapp M, Bepler T, Morin A, Brasch J, Shapiro L, Noble AJ, Berger B

EMDB-20531:
Toll receptor EM map from template picks
Method: single particle / : Rapp M, Bepler T, Morin A, Brasch J, Shapiro L, Noble AJ, Berger B

EMDB-20532:
Toll receptor EM map from Topaz picks
Method: single particle / : Rapp M, Bepler T, Morin A, Brasch J, Shapiro L, Noble AJ, Berger B

EMDB-9197:
Mouse Protocadherin gamma B6 dimer-of-dimers
Method: subtomogram averaging / : Brasch J, Noble AJ, Shapiro L, Carragher B, Potter CS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more