[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 42 items for (author: boyko & k)

EMDB-72661:
CryoEM map of microtubules generated from tubulin partitioned into droplets of delta351-1438 CLIP-170
Method: helical / : Li Q, Boyko S, Surewicz K, Surewicz WK

EMDB-65526:
LH2 complex from Ectothiorhodospira haloalkaliphila with inhibited carotenoid biosynthesis
Method: single particle / : Burtseva AD, Baymukhametov TN, Popov VO, Ashikhmin AA, Boyko KM

PDB-9w1c:
LH2 complex from Ectothiorhodospira haloalkaliphila with inhibited carotenoid biosynthesis
Method: single particle / : Burtseva AD, Baymukhametov TN, Popov VO, Ashikhmin AA, Boyko KM

EMDB-64812:
Phycobilisome Rx rod from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64813:
Phycobilisome rod R2 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64814:
Phycobilisome rod R3 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64815:
Phycobilisome core from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64816:
Phycobilisome allophycocyanin hexamer C from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64817:
Phycobilisome rod R1 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64828:
Phycobilisome from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64851:
Phycobilisome from Gloeobacter violaceus PCC 7421, conformation with diverging rods
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64852:
Phycobilisome from Gloeobacter violaceus PCC 7421, conformation with parallel rods
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64868:
Phycobilisome from Gloeobacter violaceus PCC 7421,composite map
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7g:
Phycobilisome Rx rod from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7h:
Phycobilisome rod R2 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7i:
Phycobilisome rod R3 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7j:
Phycobilisome core from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7k:
Phycobilisome allophycocyanin hexamer C from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

PDB-9v7l:
Phycobilisome rod R1 from Gloeobacter violaceus PCC 7421
Method: single particle / : Burtseva AD, Baymukhametov TN, Slonimskiy YB, Popov VO, Sluchanko NN, Boyko KM

EMDB-64272:
Structure of Modified adeno-associated viral vector, AAV5-BCD
Method: single particle / : Zhang H, Burtseva AD, Strelkova AN, Perepelkina MP, Iurlova EV, Gershovich PM, Prokof'ev AV, Kolesnichenko AS, Gulnova AR, Nurtdinov RF, Vasilev AA, Yakovlev PA, Popov VO, Boyko KM

PDB-9umb:
Structure of Modified adeno-associated viral vector, AAV5-BCD
Method: single particle / : Zhang H, Burtseva AD, Strelkova AN, Perepelkina MP, Iurlova EV, Gershovich PM, Prokof'ev AV, Kolesnichenko AS, Gulnova AR, Nurtdinov RF, Vasilev AA, Yakovlev PA, Popov VO, Boyko KM

EMDB-47168:
Structure of mutant 30S subunit with extended helix 26, version 3
Method: single particle / : Boyko K, Cate J

EMDB-47169:
Structure of mutant 30S subunit with extended helix 26, version 4
Method: single particle / : Boyko K, Cate J

PDB-9duk:
Structure of mutant 30S subunit with extended helix 26, version 3
Method: single particle / : Boyko K, Cate J

PDB-9dul:
Structure of mutant 30S subunit with extended helix 26, version 4
Method: single particle / : Boyko K, Cate J

EMDB-39770:
LH2 complex from Ectothiorhodospira haloalkaliphila at near-atomic resolution
Method: single particle / : Burtseva AD, Baymukhametov TN, Popov VO, Ashikhmin AA, Boyko KM

PDB-8z4v:
LH2 complex from Ectothiorhodospira haloalkaliphila at near-atomic resolution
Method: single particle / : Burtseva AD, Baymukhametov TN, Popov VO, Ashikhmin AA, Boyko KM

EMDB-19049:
Cryo-EM structure of hexameric BTB domain of Drosophila CG6765 protein
Method: single particle / : Bonchuk AN, Naschberger A, Baradaran R

PDB-8rc6:
Cryo-EM structure of hexameric BTB domain of Drosophila CG6765 protein
Method: single particle / : Bonchuk AN, Naschberger A, Baradaran R

EMDB-17452:
Single particle cryo-EM structure of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

EMDB-17453:
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum with Coenzyme A bound to the E2o domain
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

EMDB-17454:
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum in complex with the product succinyl-CoA
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

EMDB-17455:
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum following reaction with the 2-oxoglutarate analogue succinyl phosphonate
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

EMDB-17456:
Single particle cryo-EM structure of the complex between Corynebacterium glutamicum homohexameric 2-oxoglutarate dehydrogenase OdhA and the FHA-protein inhibitor OdhI
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

PDB-8p5t:
Single particle cryo-EM structure of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

PDB-8p5u:
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum with Coenzyme A bound to the E2o domain
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

PDB-8p5v:
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum in complex with the product succinyl-CoA
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

PDB-8p5w:
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum following reaction with the 2-oxoglutarate analogue succinyl phosphonate
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

PDB-8p5x:
Single particle cryo-EM structure of the complex between Corynebacterium glutamicum homohexameric 2-oxoglutarate dehydrogenase OdhA and the FHA-protein inhibitor OdhI
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

EMDB-11600:
Cubic core of the dihydrolipoamide acyltransferase (E2b) component of the branched-chain alpha-ketoacid dehydrogenase complex (BCKDH) from M. tuberculosis
Method: single particle / : Bruch EM, Vilela P, Bellinzoni M

EMDB-0020:
Hexameric cytochrome c nitrite reductase from the bacterium Thioalkalivibrio nitratireducens (TvNiR)
Method: single particle / : Baymukhametov TN, Chesnokov YM, Pichkur EB, Boyko KM, Tikhonova TV, Myasnikov AG, Vasiliev AL, Lipkin AV, Popov VO, Kovalchuk MV

EMDB-0256:
Natural tetrameric form of human butyrylcholinesterase (BChE)
Method: single particle / : Baymukhametov TN, Chesnokov YM, Boyko KM, Hons M, Lipkin AV, Lushchekina SV, Konarev PV, Masson P, Vasiliev AL, Popov VO, Kovalchuk MV

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more