[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 213 items for (author: bowman & m)

EMDB-70794:
Mycoplasma penetrans Methionyl tRNA Synthetase is an Asymmetric Dimer fused to N-terminal Ancillary Domains
Method: single particle / : Ghazi Esfahani B, Bowman M, Alexander R, Stroupe ME

PDB-9os7:
Mycoplasma penetrans Methionyl tRNA Synthetase is an Asymmetric Dimer fused to N-terminal Ancillary Domains
Method: single particle / : Ghazi Esfahani B, Bowman M, Alexander R, Stroupe ME

EMDB-46884:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-46914:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dhw:
Q23.MD39 in Complex with Fabs from antibodies CH01 iGL and 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

PDB-9dim:
Q23.MD39 in Complex with Fab from antibody 35O22
Method: single particle / : Lin ZJ, Cui J, Du J, Habib R, Kulp D, Pallesen J

EMDB-71091:
Cas1-Cas2/3 integrase, heterohexameric assembly
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71097:
Cas1-Cas2/3 integrase bound to foreign dsDNA fragment
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71101:
Cas1-2/3 integration complex, 34 bp foreign DNA with PAM, first transesterification
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71112:
Cas1-2/3 integration complex, 34 bp foreign DNA with PAM, CRISPR leader association
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71114:
Cas1-2/3 integration complex, 32 bp foreign DNA without PAM, CRISPR leader association
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71115:
Cas1-2/3 integration complex, 32 bp foreign DNA without PAM, first transesterification
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-71116:
Cas1-2/3 integration complex, 32 bp foreign DNA without PAM, full repeat
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

PDB-9p11:
Cas1-Cas2/3 integrase, heterohexameric assembly
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

PDB-9p1d:
Cas1-Cas2/3 integrase bound to foreign dsDNA fragment
Method: single particle / : Henriques WS, Bowman J, Hall LN, Gauvin CG, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B

EMDB-43718:
NU-refined consensus map of CXCL1-KSHV ORF74-Gi-scFv16 Complex
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

EMDB-48095:
3DFlex refined map of CXCL1-KSHV ORF74-Gi-scFv16 Complex
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

EMDB-48097:
Local refined cryoEM map of CXCL1-KSHV ORF74 region
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

EMDB-48100:
Cryo-EM Structure of CXCL1-KSHV ORF74-Gi-scFv16 Complex
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

PDB-9ejc:
Cryo-EM Structure of CXCL1-KSHV ORF74-Gi-scFv16 Complex
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

EMDB-43717:
Cryo-EM Structure of KSHV ORF74 Apo Dimer at 2.8A
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

EMDB-43720:
Cryo-EM Map of KSHV ORF74-BRIL-BAK5-Nb complex at 3.7A
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

PDB-8w1a:
Cryo-EM Structure of KSHV ORF74 Apo Dimer at 2.8A
Method: single particle / : Sahoo B, Seo HD, Dai X, Jung J

EMDB-46466:
Map of endoH-treated hemagglutinin A/Sing/INFIMH/16
Method: single particle / : Torrents de la Pena A, Ward AB, de Paiva Froes Rocha R

EMDB-46477:
Map of influenza hemagglutinin A/Sing/INFIMH/16 expressed in GntI- cells
Method: single particle / : Torrents de la Pena A, de Paiva Froes Rocha R, Ward AB

EMDB-46500:
Map of hemagglutinin A/Sing/INFIMH/16 expressed in 293F cells
Method: single particle / : Torrents de la Pena A, Ward AB, de Paiva Froes Rocha R

PDB-9d0y:
Map of endoH-treated hemagglutinin A/Sing/INFIMH/16
Method: single particle / : Torrents de la Pena A, Ward AB, de Paiva Froes Rocha R

PDB-9d1u:
Map of influenza hemagglutinin A/Sing/INFIMH/16 expressed in GntI- cells
Method: single particle / : Torrents de la Pena A, de Paiva Froes Rocha R, Ward AB

PDB-9d2m:
Map of hemagglutinin A/Sing/INFIMH/16 expressed in 293F cells
Method: single particle / : Torrents de la Pena A, Ward AB, de Paiva Froes Rocha R

EMDB-45997:
Hemagglutinin A/Hong Kong/1/68 produced in GnTI- cells
Method: single particle / : Torrents de la Pena A, de Paiva Froes Rocha R, Ward AB

EMDB-45998:
Endo H-treated hemagglutinin A/Hong Kong/1/68
Method: single particle / : Torrents de la Pena A, de Paiva Froes Rocha R, Ward AB

PDB-9cxt:
Hemagglutinin A/Hong Kong/1/68 produced in GnTI- cells
Method: single particle / : Torrents de la Pena A, de Paiva Froes Rocha R, Ward AB

PDB-9cxu:
Endo H-treated hemagglutinin A/Hong Kong/1/68
Method: single particle / : Torrents de la Pena A, de Paiva Froes Rocha R, Ward AB

EMDB-49060:
2.37 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome reconstructruction. Combined 1:1 and 2:1 complexes
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

EMDB-49061:
2.54 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 1:1 complex
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

EMDB-49062:
2.61 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 2:1 complex
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

EMDB-49063:
2.88 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 2:1 complex with DNA-binding domain
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

EMDB-49064:
2.90 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 2:1 complex with C-terminal activator helix around residue 945
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

PDB-9n6h:
2.54 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 1:1 complex
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

PDB-9n6i:
2.61 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 2:1 complex
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

PDB-9n6k:
2.88 A S.cerevisiae Chd1[L886G/L889G/L891G]-nucleosome 2:1 complex with DNA-binding domain
Method: single particle / : Nodelman IM, Folkwein HJ, Armache JP, Bowman GD

EMDB-36766:
Untilted (0 Degree Tilted) Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36767:
10 Degree Tilted Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36768:
20 Degree Tilted Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36769:
30 Degree Tilted Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36770:
40 Degree Tilted Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36771:
50 Degree Tilted Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36772:
60 Degree Tilted Single-Particle CryoEM Reconstruction of AAV2 Viral Capsid
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36807:
Untilted (0 Degree Tilted) Single-Particle CryoEM Reconstruction of Apoferritin
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

EMDB-36809:
10 Degree Tilted Single-Particle CryoEM Reconstruction of Apoferritin
Method: single particle / : Aiyer S, Tan YZ, Lyumkis D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more