[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 115 items for (author: berry & c)

EMDB-48423:
Angavokely virus (AngV) fusion (F) protein ectodomain in pre-fusion conformation
Method: single particle / : Lella M, Acharya P

EMDB-48535:
AngV-F Pre-fusion Protein
Method: single particle / : Lella M, Acharya P

PDB-9mnh:
Angavokely virus (AngV) fusion (F) protein ectodomain in pre-fusion conformation
Method: single particle / : Lella M, Acharya P

PDB-9mqn:
AngV-F Pre-fusion Protein
Method: single particle / : Lella M, Acharya P

EMDB-18948:
Zorya anti-bacteriophage defense system ZorC WT
Method: single particle / : Hu H, Taylor NMI

PDB-8r68:
Zorya anti-bacteriophage defense system ZorC WT
Method: single particle / : Hu H, Taylor NMI

EMDB-18747:
Zorya anti-bacteriophage defense system ZorD apo form
Method: single particle / : Hu H, Taylor NMI

EMDB-18750:
Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S
Method: single particle / : Hu H, Taylor NMI

EMDB-18751:
Zorya anti-bacteriophage defense system ZorAB
Method: single particle / : Hu H, Taylor NMI

EMDB-18752:
EcZorAB_WT ZorB PGBDs Local refinement
Method: single particle / : Haidai H, Nicholas MIT

EMDB-18754:
Zorya anti-bacteriophage defense system ZorAB ZorA E86A_E89A, Calcium binding site mutation
Method: single particle / : Hu H, Taylor NMI

EMDB-18756:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_359-592, ZorA tail middle deletion.
Method: single particle / : Hu H, Taylor NMI

EMDB-18766:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_435-729, ZorA tail tip deletion.
Method: single particle / : Hu H, Taylor NMI

PDB-8qy7:
Zorya anti-bacteriophage defense system ZorD apo form
Method: single particle / : Hu H, Taylor NMI

PDB-8qyc:
Zorya anti-bacteriophage defense system ZorD in complex with ATP-gamma-S
Method: single particle / : Hu H, Taylor NMI

PDB-8qyd:
Zorya anti-bacteriophage defense system ZorAB
Method: single particle / : Hu H, Taylor NMI

PDB-8qyh:
Zorya anti-bacteriophage defense system ZorAB ZorA E86A_E89A, Calcium binding site mutation
Method: single particle / : Hu H, Taylor NMI

PDB-8qyk:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_359-592, ZorA tail middle deletion.
Method: single particle / : Hu H, Taylor NMI

PDB-8qyy:
Zorya anti-bacteriophage defense system ZorAB, ZorA delta_435-729, ZorA tail tip deletion.
Method: single particle / : Hu H, Taylor NMI

EMDB-43225:
DH270.6 Fab bound to the HIV-1 CH848 DE3 SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-43228:
VRC01 Fab bound to the HIV-1 CH848 DE3 SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-43231:
CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-43232:
CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-43233:
CH505.M5.G458Y CE2 Design SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vgv:
DH270.6 Fab bound to the HIV-1 CH848 DE3 SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vgw:
VRC01 Fab bound to the HIV-1 CH848 DE3 SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vh1:
CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vh2:
CH235.12 Fab bound to the HIV-1 CH505.M5 SOSIP
Method: single particle / : Henderson R, Acharya P

PDB-8vh3:
CH505.M5.G458Y CE2 Design SOSIP
Method: single particle / : Henderson R, Acharya P

EMDB-44246:
Cryo-EM structure of HIV-1 JRFL v6 Env in complex with vaccine-elicited, Membrane Proximal External Region (MPER) directed antibody DH1317.4.
Method: single particle / : Acharya P, Parsons R, Janowska K, Williams WB, Alam M, Haynes BF

EMDB-40919:
The cryo-EM structure of PPP2R5A/HIV-1 Vif/CBFb/EloB/EloC complex
Method: single particle / : Hu Y, Xiong Y

PDB-8szk:
The cryo-EM structure of PPP2R5A/HIV-1 Vif/CBFb/EloB/EloC complex
Method: single particle / : Hu Y, Xiong Y

EMDB-40603:
GPR161 Gs heterotrimer
Method: single particle / : Hoppe N, Manglik A, Harrison S

PDB-8smv:
GPR161 Gs heterotrimer
Method: single particle / : Hoppe N, Manglik A, Harrison S

EMDB-16963:
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Method: single particle / : Rowland P

PDB-8olu:
Leishmania tarentolae proteasome 20S subunit in complex with 1-Benzyl-N-(3-(cyclopropylcarbamoyl)phenyl)-6-oxo-1,6-dihydropyridazine-3-carboxamide
Method: single particle / : Rowland P

EMDB-27706:
Vaccine elicited Antibody MU89 bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer
Method: single particle / : Stalls V, Acharya P

EMDB-27776:
Vaccine elicited Antibody MU89+S27Y bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer
Method: single particle / : Stalls V, Acharya P

PDB-8dto:
Vaccine elicited Antibody MU89 bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer
Method: single particle / : Stalls V, Acharya P

PDB-8dy6:
Vaccine elicited Antibody MU89+S27Y bound to CH848.D949.10.17_N133D_N138T.DS.SOSIP.664 HIV-1 Env trimer
Method: single particle / : Stalls V, Acharya P

EMDB-29216:
Nodavirus RNA replication crown from baculovirus-expressed viral protein A plus RNA1 template
Method: subtomogram averaging / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

EMDB-29217:
Nodavirus RNA replication proto-crown from baculovirus-expressed viral protein A minus RNA1 template
Method: subtomogram averaging / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

EMDB-29218:
Nodavirus RNA replication crown from flock house virus-infected cells
Method: subtomogram averaging / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

EMDB-29289:
Nodavirus RNA replication proto-crown, detergent-solubliized C12 multimer
Method: single particle / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

EMDB-29290:
Nodavirus RNA replication proto-crown, detergent-solubliized C11 multimer
Method: single particle / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

EMDB-29291:
Nodavirus RNA replication protein A polymerase domain, local refinement
Method: single particle / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

PDB-8fm9:
Nodavirus RNA replication proto-crown, detergent-solubliized C12 multimer
Method: single particle / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

PDB-8fma:
Nodavirus RNA replication proto-crown, detergent-solubliized C11 multimer
Method: single particle / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

PDB-8fmb:
Nodavirus RNA replication protein A polymerase domain, local refinement
Method: single particle / : Zhan H, Unchwaniwala N, Rebolledo Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon J, Grant T, Ahlquist P

EMDB-12183:
Salmonella LP ring 26 mer refined in C26 map
Method: single particle / : Johnson S, Furlong E

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more