[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 133 items for (author: bell & ce)

EMDB-16860:
Ivabradine bound to HCN4 channel
Method: single particle / : Saponaro A, Chaves-Sanjuan A, Sharifzadeh AS, Clarke OB, Marabelli C, Bolognesi M, Thiel G, Moroni A

PDB-8ofi:
Ivabradine bound to HCN4 channel
Method: single particle / : Saponaro A, Chaves-Sanjuan A, Sharifzadeh AS, Clarke OB, Marabelli C, Bolognesi M, Thiel G, Moroni A

EMDB-18973:
Cryo-EM structure of Human SHMT1
Method: single particle / : Spizzichino S, Marabelli C, Bharadwaj A, Jakobi AJ, Chaves-Sanjuan A, Giardina G, Bolognesi M, Cutruzzola F

PDB-8r7h:
Cryo-EM structure of Human SHMT1
Method: single particle / : Spizzichino S, Marabelli C, Bharadwaj A, Jakobi AJ, Chaves-Sanjuan A, Giardina G, Bolognesi M, Cutruzzola F

EMDB-15525:
Cryo-EM structure of the RecA postsynaptic filament from S. pneumoniae
Method: helical / : Perry TN, Fronzes R, Polard P, Hertzog M

PDB-8amf:
Cryo-EM structure of the RecA postsynaptic filament from S. pneumoniae
Method: helical / : Perry TN, Fronzes R, Polard P, Hertzog M

EMDB-29046:
Wildtype rat TRPV2 in nanodiscs bound to RR
Method: single particle / : Pumroy RA, Protopopova AD, Rocereta JA, De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

EMDB-29047:
Wildtype rat TRPV2 in nanodiscs bound to RR and 2-APB
Method: single particle / : Pumroy RA, Protopopova AD, Rocereta JA, De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

EMDB-29048:
RR-bound wildtype rabbit TRPV5 in nanodiscs
Method: single particle / : Fluck EC, De Jesus-Perez JJ, Pumroy RA, Protopopova AD, Rocereta JA, Moiseenkova-Bell VY

EMDB-29051:
Wildtype rabbit TRPV5 into nanodiscs in the presence of PI(4,5)P2 and ruthenium red
Method: single particle / : De Jesus-Perez JJ, Fluck EC, Pumroy RA, Protopopova AD, Rocereta JA, Moiseenkova-Bell VY

PDB-8ffl:
Wildtype rat TRPV2 in nanodiscs bound to RR
Method: single particle / : Pumroy RA, Protopopova AD, Rocereta JA, De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

PDB-8ffm:
Wildtype rat TRPV2 in nanodiscs bound to RR and 2-APB
Method: single particle / : Pumroy RA, Protopopova AD, Rocereta JA, De Jesus-Perez JJ, Fluck EC, Moiseenkova-Bell VY

PDB-8ffn:
RR-bound wildtype rabbit TRPV5 in nanodiscs
Method: single particle / : Fluck EC, De Jesus-Perez JJ, Pumroy RA, Protopopova AD, Rocereta JA, Moiseenkova-Bell VY

PDB-8ffq:
Wildtype rabbit TRPV5 into nanodiscs in the presence of PI(4,5)P2 and ruthenium red
Method: single particle / : De Jesus-Perez JJ, Fluck EC, Pumroy RA, Protopopova AD, Rocereta JA, Moiseenkova-Bell VY

EMDB-18657:
PROTAC-mediated complex of KRAS with VHL/Elongin-B/Elongin-C/Cullin-2/Rbx1
Method: single particle / : Fischer G, Peter D, Arce-Solano S

PDB-8qu8:
PROTAC-mediated complex of KRAS with VHL/Elongin-B/Elongin-C/Cullin-2/Rbx1
Method: single particle / : Fischer G, Peter D, Arce-Solano S

EMDB-15359:
Structure of dimeric yeast RNA polymerase II bound to a transcription bubble (focused map of monomer 1)
Method: single particle / : Carminati M, Manav MC, Bellini D, Passmore LA

EMDB-15360:
Structure of dimeric yeast RNA polymerase II bound to a transcription bubble (focused map of monomer 2)
Method: single particle / : Carminati M, Manav MC, Bellini D, Passmore LA

EMDB-15358:
Structure of dimeric yeast RNA polymerase II bound to a transcription bubble (consensus map)
Method: single particle / : Carminati M, Manav MC, Bellini D, Passmore LA

EMDB-41153:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

EMDB-41154:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcf:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcg:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

EMDB-17452:
Single particle cryo-EM structure of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

EMDB-17453:
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum with Coenzyme A bound to the E2o domain
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

EMDB-17454:
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum in complex with the product succinyl-CoA
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

EMDB-17455:
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum following reaction with the 2-oxoglutarate analogue succinyl phosphonate
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

EMDB-17456:
Single particle cryo-EM structure of the complex between Corynebacterium glutamicum homohexameric 2-oxoglutarate dehydrogenase OdhA and the FHA-protein inhibitor OdhI
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

PDB-8p5t:
Single particle cryo-EM structure of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

PDB-8p5u:
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum with Coenzyme A bound to the E2o domain
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

PDB-8p5v:
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum in complex with the product succinyl-CoA
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

PDB-8p5w:
Single particle cryo-EM structure of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum following reaction with the 2-oxoglutarate analogue succinyl phosphonate
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

PDB-8p5x:
Single particle cryo-EM structure of the complex between Corynebacterium glutamicum homohexameric 2-oxoglutarate dehydrogenase OdhA and the FHA-protein inhibitor OdhI
Method: single particle / : Yang L, Mechaly AM, Bellinzoni M

EMDB-15065:
Cryo-EM structure of the Human SHMT1-RNA complex
Method: single particle / : Spizzichino S, Marabelli C, Bharadwaj A, Jakobi AJ, Chaves-Sanjuan A, Giardina G, Bolognesi M, Cutruzzola F

PDB-8a11:
Cryo-EM structure of the Human SHMT1-RNA complex
Method: single particle / : Spizzichino S, Marabelli C, Bharadwaj A, Jakobi AJ, Chaves-Sanjuan A, Giardina G, Bolognesi M, Cutruzzola F

EMDB-15524:
Cryo-EM structure of the RecA presynaptic filament from S.pneumoniae
Method: helical / : Perry TN, Fronzes R, Polard P, Hertzog M

PDB-8amd:
Cryo-EM structure of the RecA presynaptic filament from S.pneumoniae
Method: helical / : Perry TN, Fronzes R, Polard P, Hertzog M

EMDB-27903:
Design of Diverse Asymmetric Pockets in de novo Homo-oligomeric Proteins
Method: single particle / : Gerben S, Borst AJ, Baker D

PDB-8e55:
Design of Diverse Asymmetric Pockets in de novo Homo-oligomeric Proteins
Method: single particle / : Gerben S, Borst AJ, Baker D

EMDB-16435:
microtubule decorated with tubulin oligomers in presence of APC C-terminal domain. (here only the microtubule map section is represented)
Method: helical / : Serre L, Arnal I

PDB-8c5c:
microtubule decorated with tubulin oligomers in presence of APC C-terminal domain. (here only map corresponding to the 13-pf microtubule is represented)
Method: helical / : Serre L, Arnal I

EMDB-14634:
Cryo-EM structure of GMPCPP-microtubules in complex with VASH2-SVBP
Method: single particle / : Choi SR, Blum T, Steinmetz MO

PDB-7zcw:
Cryo-EM structure of GMPCPP-microtubules in complex with VASH2-SVBP
Method: single particle / : Choi SR, Blum T, Steinmetz MO

EMDB-26434:
Structure of RecT protein from Listeria innoccua phage A118 in complex with 83-mer annealed duplex
Method: single particle / : Bell CE, Caldwell BJ

EMDB-26437:
Structure of RecT protein from Listeria innoccua phage A118 in complex with 83-mer ssDNA
Method: single particle / : Bell CE, Caldwell BJ

EMDB-25100:
Unmethylated Mtb Ribosome 50S with SEQ-9
Method: single particle / : Xing Z, Cui Z

PDB-7sfr:
Unmethylated Mtb Ribosome 50S with SEQ-9
Method: single particle / : Xing Z, Cui Z, Zhang J, TB Structural Genomics Consortium (TBSGC)

EMDB-14853:
SARS-CoV-2 Spike in complex with the neutralizing antibody Cv2.1169
Method: single particle / : Guardado-Calvo P, Fernandez I, Rey FA

EMDB-22865:
CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
Method: single particle / : Cui Z, Zhang J

PDB-7kgb:
CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
Method: single particle / : Cui Z, Zhang J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more