[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 135 items for (author: barr & fa)

EMDB-44633:
Cryo-EM structure of apo NVL
Method: single particle / : Cruz VE, Erzberger JP

EMDB-44634:
Cryo-EM structure of NVL bound the the MM017 inhibitor
Method: single particle / : Cruz VE, Erzberger JP

EMDB-51890:
ATP-bound human mitochondrial Hsp60-Hsp10 football complex (C1)
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

EMDB-51891:
ATP-bound human mitochondrial Hsp60-Hsp10 half football complex (C1)
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

EMDB-51892:
ATP-bound human mitochondrial Hsp60 double-ring complex (C1)
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

EMDB-51893:
Apo human mitochondrial Hsp60 (C1)
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

PDB-9h5s:
ATP-bound human mitochondrial Hsp60-Hsp10 football complex (C1)
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

PDB-9h5t:
ATP-bound human mitochondrial Hsp60-Hsp10 half football complex (C1)
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

PDB-9h5u:
ATP-bound human mitochondrial Hsp60 double-ring complex (C1)
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

PDB-9h5v:
Apo human mitochondrial Hsp60 (C1)
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

EMDB-19930:
ATP-bound human mitochondrial Hsp60-Hsp10 football complex
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

EMDB-19931:
ATP-bound human mitochondrial Hsp60-Hsp10 half football complex
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

EMDB-19932:
ATP-bound human mitochondrial Hsp60 double-ring complex
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

EMDB-19933:
Apo human mitochondrial Hsp60
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

EMDB-19934:
ADP:BeF3-bound human mitochondrial Hsp60-Hsp10 football complex
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I, Shkolnisky Y

EMDB-19935:
ADP:BeF3-bound human mitochondrial Hsp60-Hsp10 half-football complex
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I, Shkolnisky Y

EMDB-19936:
ADP:BeF3-bound human mitochondrial Hsp60 double-ring complex
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I, Shkolnisky Y

PDB-9es0:
ATP-bound human mitochondrial Hsp60-Hsp10 football complex
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

PDB-9es1:
ATP-bound human mitochondrial Hsp60-Hsp10 half football complex
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

PDB-9es2:
ATP-bound human mitochondrial Hsp60 double-ring complex
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

PDB-9es3:
Apo human mitochondrial Hsp60
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I

PDB-9es4:
ADP:BeF3-bound human mitochondrial Hsp60-Hsp10 football complex
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I, Shkolnisky Y

PDB-9es5:
ADP:BeF3-bound human mitochondrial Hsp60-Hsp10 half-football complex
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I, Shkolnisky Y

PDB-9es6:
ADP:BeF3-bound human mitochondrial Hsp60 double-ring complex
Method: single particle / : Lopez-Alonso JP, Tascon I, Ubarretxena-Belandia I, Shkolnisky Y

EMDB-19513:
Chromosome Passenger Complex (CPC) localization module in complex with H3.T3p-nucleosome
Method: single particle / : Ruza RR, Barr FA

EMDB-19514:
Borealin N-terminus in complex with H3.T3p-nucleosome
Method: single particle / : Ruza RR, Barr FA

EMDB-19684:
Chromosome Passenger Complex (CPC) localization module in complex with H3.T3p-nucleosome - focused refinement of the distal end of CPC
Method: single particle / : Ruza RR, Barr FA

EMDB-19685:
Chromosome Passenger Complex (CPC) localization module in complex with H3.T3p-nucleosome - raw concensus map
Method: single particle / : Ruza RR, Barr FA

EMDB-19050:
RAD51 nucleoprotein filament on abasic single-stranded DNA
Method: helical / : Appleby R, Pellegrini L

EMDB-19051:
RAD51 nucleoprotein filament on double-stranded abasic DNA
Method: helical / : Appleby R, Pellegrini L

PDB-8rcd:
RAD51 nucleoprotein filament on abasic single-stranded DNA
Method: helical / : Appleby R, Pellegrini L

PDB-8rcf:
RAD51 nucleoprotein filament on double-stranded abasic DNA
Method: helical / : Appleby R, Pellegrini L

EMDB-44246:
Cryo-EM structure of HIV-1 JRFL v6 Env in complex with vaccine-elicited, Membrane Proximal External Region (MPER) directed antibody DH1317.4.
Method: single particle / : Acharya P, Parsons R, Janowska K, Williams WB, Alam M, Haynes BF

EMDB-19184:
Late alpha-Synuclein fibril structure from liquid-liquid phase separations.
Method: helical / : De Simone A, Barritt JD, Chen S, Cascella R, Cecchi C, Bigi A, Jarvis JA, Chiti F, Dobson CM, Fusco G

PDB-8ri9:
Late alpha-Synuclein fibril structure from liquid-liquid phase separations.
Method: helical / : De Simone A, Barritt JD, Chen S, Cascella R, Cecchi C, Bigi A, Jarvis JA, Chiti F, Dobson CM, Fusco G

EMDB-33650:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-33651:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-7y71:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-7y72:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-29930:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor CT1
Method: single particle / : Schenk A, Deniston C, Noeske J

PDB-8gcc:
T. cruzi topoisomerase II alpha bound to dsDNA and the covalent inhibitor CT1
Method: single particle / : Schenk A, Deniston C, Noeske J

EMDB-15905:
Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
Method: single particle / : Koller TO, Graf M, Wilson DN

PDB-8b7y:
Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
Method: single particle / : Koller TO, Graf M, Wilson DN

EMDB-14121:
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Method: single particle / : Koller TO, Beckert B, Wilson DN

PDB-7qq3:
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Method: single particle / : Koller TO, Beckert B, Wilson DN

EMDB-25100:
Unmethylated Mtb Ribosome 50S with SEQ-9
Method: single particle / : Xing Z, Cui Z

PDB-7sfr:
Unmethylated Mtb Ribosome 50S with SEQ-9
Method: single particle / : Xing Z, Cui Z, Zhang J, TB Structural Genomics Consortium (TBSGC)

EMDB-26363:
Head region of insulin receptor ectodomain (A-isoform) bound to the non-insulin agonist IM459
Method: single particle / : Kirk NS, Lawrence MC

EMDB-26364:
Head region of insulin receptor ectodomain (A-isoform) bound to the non-insulin agonist IM462
Method: single particle / : Kirk NS, Lawrence MC

PDB-7u6d:
Head region of insulin receptor ectodomain (A-isoform) bound to the non-insulin agonist IM459
Method: single particle / : Kirk NS, Lawrence MC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more