[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 41 items for (author: bakker & a)

EMDB-18592:
E.coli DNA gyrase in complex with 217 bp substrate DNA and LEI-800

PDB-8qqi:
E.coli DNA gyrase in complex with 217 bp substrate DNA and LEI-800

EMDB-42981:
Prefusion-stabilized Respirovirus type 3 Fusion protein

PDB-8v5a:
Prefusion-stabilized Respirovirus type 3 Fusion protein

EMDB-42983:
Structure of the Human Respirovirus 3 Fusion Protein Bound to Camelid Nanobodies 4C03 and 4C06

EMDB-42987:
Structure of the Human Respirovirus 3 Fusion Protein Bound to Camelid Nanobodies 1D10 and 4C06

PDB-8v5k:
Structure of the Human Respirovirus 3 Fusion Protein Bound to Camelid Nanobodies 4C03 and 4C06

PDB-8v62:
Structure of the Human Respirovirus 3 Fusion Protein Bound to Camelid Nanobodies 1D10 and 4C06

EMDB-16776:
Human arginylated beta-actin

PDB-8cog:
Human arginylated beta-actin

EMDB-29454:
Structure of Covid Spike variant deltaN135 in fully closed form

EMDB-29455:
Structure of Covid Spike variant deltaN135 with one erect RBD

EMDB-29456:
Structure of Covid Spike variant deltaN25 with one erect RBD

PDB-8fu7:
Structure of Covid Spike variant deltaN135 in fully closed form

PDB-8fu8:
Structure of Covid Spike variant deltaN135 with one erect RBD

PDB-8fu9:
Structure of Covid Spike variant deltaN25 with one erect RBD

EMDB-13856:
Tomogram of respiratory syncytial virus filamentous virion

EMDB-13855:
Structure of respiratory syncytial virus matrix layer

EMDB-11639:
Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(S-closed trimer)

EMDB-11719:
Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(One up trimer)

PDB-7a4n:
Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(S-closed trimer)

PDB-7ad1:
Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(One up trimer)

EMDB-3138:
Multiple capsid-stabilizing protein-RNA and protein-protein interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis

EMDB-3322:
Multiple capsid-stabilizing interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis

EMDB-3137:
Multiple capsid-stabilizing protein-RNA and protein-protein interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis

PDB-5apm:
Multiple capsid-stabilizing protein-RNA and protein-protein interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis

EMDB-2761:
Structural Basis of Human Parechovirus Neutralization by Human Monoclonal Antibodies

PDB-4udf:
STRUCTURAL BASIS OF HUMAN PARECHOVIRUS NEUTRALIZATION BY HUMAN MONOCLONAL ANTIBODIES

PDB-4ctf:
The limits of structural plasticity in a picornavirus capsid revealed by a massively expanded equine rhinitis A virus particle

PDB-4ctg:
The limits of structural plasticity in a picornavirus capsid revealed by a massively expanded equine rhinitis A virus particle

EMDB-2389:
The limits of structural plasticity in a picornavirus capsid revealed by a massively expanded equine rhinitis A virus particle

EMDB-2390:
The limits of structural plasticity in a picornavirus capsid revealed by a massively expanded equine rhinitis A virus particle

EMDB-5793:
A common solution to group 2 influenza virus neutralization

EMDB-5794:
A common solution to group 2 influenza virus neutralization

PDB-4bkk:
The Respiratory Syncytial Virus nucleoprotein-RNA complex forms a left-handed helical nucleocapsid.

EMDB-2369:
The Respiratory Syncytial Virus nucleoprotein-RNA complex forms a left-handed helical nucleocapsid.

EMDB-2370:
The Respiratory Syncytial Virus nucleoprotein-RNA complex forms a left-handed helical nucleocapsid.

PDB-3zx8:
Cryo-EM reconstruction of native and expanded Turnip Crinkle virus

PDB-3zx9:
Cryo-EM reconstruction of native and expanded Turnip Crinkle virus

EMDB-1863:
Cryo-EM reconstruction of native and expanded Turnip Crinkle virus

EMDB-1864:
Cryo-EM reconstruction of native and expanded Turnip Crinkle virus

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more