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Showing all 50 items for (author: bakker & a)

EMDB-42060:
Cryo-EM structure of prefusion-stabilized influenza B hemagglutinin
Method: single particle / : Juraszek J, Milder FJ, Yu X, Blokland S, Overveld D, Tamara S, Bakkers MJG, Rutten L, Sharma S, Langedijk JPM

EMDB-43273:
Prefusion-stabilized trimer of FluB-HA under low pH conditions
Method: single particle / : Juraszek J, Milder FJ, Yu X, Blokland S, Overveld D, Tamara S, Bakkers MJG, Rutten L, Sharma S, Langedijk JPM

PDB-8uad:
Cryo-EM structure of prefusion-stabilized influenza B hemagglutinin
Method: single particle / : Juraszek J, Milder FJ, Yu X, Blokland S, Overveld D, Tamara S, Bakkers MJG, Rutten L, Sharma S, Langedijk JPM

EMDB-44117:
Cryo-EM structure of Prefusion RSV F (RSV220975)
Method: single particle / : Yu X, Langedijk JPM

PDB-9b2x:
Cryo-EM structure of Prefusion RSV F (RSV220975)
Method: single particle / : Yu X, Langedijk JPM

EMDB-43516:
Cryo-EM structure of HMPV (MPV-2cREKR)
Method: single particle / : Yu X, Langedijk JPM

EMDB-43517:
Cryo-EM structure of HMPV (MPV-2cREKR)
Method: single particle / : Yu X, Langedijk JPM

PDB-8vt2:
cryo-EM structure of HMPV (MPV-2c)
Method: single particle / : Yu X, Langedijk JPM

PDB-8vt3:
cryo-EM structure of HMPV (MPV-2cREKR)
Method: single particle / : Yu X, Langedijk JPM

EMDB-18592:
E.coli DNA gyrase in complex with 217 bp substrate DNA and LEI-800
Method: single particle / : Ghilarov D, Martin NI, van der Stelt M

PDB-8qqi:
E.coli DNA gyrase in complex with 217 bp substrate DNA and LEI-800
Method: single particle / : Ghilarov D, Martin NI, van der Stelt M

EMDB-42981:
Prefusion-stabilized Respirovirus type 3 Fusion protein
Method: single particle / : Johnson NV, McLellan JS

PDB-8v5a:
Prefusion-stabilized Respirovirus type 3 Fusion protein
Method: single particle / : Johnson NV, McLellan JS

EMDB-42983:
Structure of the Human Respirovirus 3 Fusion Protein Bound to Camelid Nanobodies 4C03 and 4C06
Method: single particle / : Johnson NV, Ramamohan AR, McLellan JS

EMDB-42987:
Structure of the Human Respirovirus 3 Fusion Protein Bound to Camelid Nanobodies 1D10 and 4C06
Method: single particle / : Johnson NJ, Ramamohan AR, McLellan JS

PDB-8v5k:
Structure of the Human Respirovirus 3 Fusion Protein Bound to Camelid Nanobodies 4C03 and 4C06
Method: single particle / : Johnson NV, Ramamohan AR, McLellan JS

PDB-8v62:
Structure of the Human Respirovirus 3 Fusion Protein Bound to Camelid Nanobodies 1D10 and 4C06
Method: single particle / : Johnson NJ, Ramamohan AR, McLellan JS

EMDB-16776:
Human arginylated beta-actin
Method: single particle / : Pinto CS, Bakker SE, Suchenko A, Hussain H, Hatano T, Sampath K, Chinthalapudi K, Mishima M, Balasubramanian M

PDB-8cog:
Human arginylated beta-actin
Method: single particle / : Pinto CS, Bakker SE, Suchenko A, Hussain H, Hatano T, Sampath K, Chinthalapudi K, Mishima M, Balasubramanian M

EMDB-29454:
Structure of Covid Spike variant deltaN135 in fully closed form
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

EMDB-29455:
Structure of Covid Spike variant deltaN135 with one erect RBD
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

EMDB-29456:
Structure of Covid Spike variant deltaN25 with one erect RBD
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

PDB-8fu7:
Structure of Covid Spike variant deltaN135 in fully closed form
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

PDB-8fu8:
Structure of Covid Spike variant deltaN135 with one erect RBD
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

PDB-8fu9:
Structure of Covid Spike variant deltaN25 with one erect RBD
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

EMDB-13856:
Tomogram of respiratory syncytial virus filamentous virion
Method: electron tomography / : Conley MJ, Vijayakrishnan S, Bhella D

EMDB-13855:
Structure of respiratory syncytial virus matrix layer
Method: subtomogram averaging / : Conley MJ, Vijayakrishnan S, Bhella D

EMDB-11639:
Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(S-closed trimer)
Method: single particle / : Renault LLR, Rutten L, Juraszek J, Langedijk JPM

EMDB-11719:
Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(One up trimer)
Method: single particle / : Renault LLR, Rutten L, Juraszek J, Langedijk JPM

PDB-7a4n:
Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(S-closed trimer)
Method: single particle / : Rutten L, Renault LLR, Juraszek J, Langedijk JPM

PDB-7ad1:
Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(One up trimer)
Method: single particle / : Rutten L, Renault LLR, Juraszek J, Langedijk JPM

EMDB-3138:
Multiple capsid-stabilizing protein-RNA and protein-protein interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis
Method: single particle / : Shakeel S, Westerhuis BM, Domanska A, Koning RI, Matadeen R, Koster AJ, Bakker AQ, Beaumont T, Wolthers KC, Butcher SJ

EMDB-3322:
Multiple capsid-stabilizing interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis
Method: single particle / : Shakeel S, Westerhuis BM, Domanska A, Koning RI, Matadeen R, Koster AJ, Bakker AQ, Beaumont T, Wolthers KC, Butcher SJ

EMDB-3137:
Multiple capsid-stabilizing protein-RNA and protein-protein interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis
Method: single particle / : Shakeel S, Westerhuis BM, Domanska A, Koning RI, Matadeen R, Koster AJ, Bakker AQ, Beaumont T, Wolthers KC, Butcher SJ

PDB-5apm:
Multiple capsid-stabilizing protein-RNA and protein-protein interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis
Method: single particle / : Shakeel S, Westerhuis BM, Domanska A, Koning RI, Matadeen R, Koster AJ, Bakker AQ, Beaumont T, Wolthers KC, Butcher SJ

EMDB-2761:
Structural Basis of Human Parechovirus Neutralization by Human Monoclonal Antibodies
Method: single particle / : Shakeel S, Westerhuis BM, Ora A, Koen G, Bakker A, Claassen Y, Beaumont T, Wolthers K, Butcher SJ

PDB-4udf:
STRUCTURAL BASIS OF HUMAN PARECHOVIRUS NEUTRALIZATION BY HUMAN MONOCLONAL ANTIBODIES
Method: single particle / : Shakeel S, Westerhuis BM, Ora A, Koen G, Bakker AQ, Claassen Y, Beaumont T, Wolthers KC, Butcher SJ

PDB-4ctf:
The limits of structural plasticity in a picornavirus capsid revealed by a massively expanded equine rhinitis A virus particle
Method: single particle / : Bakker SE, Groppelli E, Pearson AR, Stockley PG, Rowlands DJ, Ranson NA

PDB-4ctg:
The limits of structural plasticity in a picornavirus capsid revealed by a massively expanded equine rhinitis A virus particle
Method: single particle / : Bakker SE, Groppelli E, Pearson AR, Stockley PG, Rowlands DJ, Ranson NA

EMDB-2389:
The limits of structural plasticity in a picornavirus capsid revealed by a massively expanded equine rhinitis A virus particle
Method: single particle / : Bakker SE, Groppelli E, Pearson AR, Stockley PG, Rowlands DJ, Ranson NA

EMDB-2390:
The limits of structural plasticity in a picornavirus capsid revealed by a massively expanded equine rhinitis A virus particle
Method: single particle / : Bakker SE, Groppelli E, Pearson AR, Stockley PG, Rowlands DJ, Ranson NA

EMDB-5793:
A common solution to group 2 influenza virus neutralization
Method: single particle / : Friesen RHE, Leeb PS, Stoop EJM, Hoffman RMB, Ekiert DC, Bhabha G, Yu W, Juraszek J, Koudstaal W, Jongeneelen M, Korse HJWM, Ophorst C, Brinkman-van der Linden ECM, Throsby M, Kwakkenbos MJ, Bakkerd AQ, Beaumont Y, Spits H, Kwaks T, Vogels R, Ward AB, Goudsmit J, Wilson IA

EMDB-5794:
A common solution to group 2 influenza virus neutralization
Method: single particle / : Friesen RHE, Leeb PS, Stoop EJM, Hoffman RMB, Ekiert DC, Bhabha G, Yu W, Juraszek J, Koudstaal W, Jongeneelen M, Korse HJWM, Ophorst C, Brinkman-van der Linden ECM, Throsby M, Kwakkenbos MJ, Bakkerd AQ, Beaumont Y, Spits H, Kwaks T, Vogels R, Ward AB, Goudsmit J, Wilson IA

PDB-4bkk:
The Respiratory Syncytial Virus nucleoprotein-RNA complex forms a left-handed helical nucleocapsid.
Method: electron tomography / : Bakker SE, Duquerroy S, Galloux M, Loney C, Conner E, Eleouet JF, Rey FA, Bhella D

EMDB-2369:
The Respiratory Syncytial Virus nucleoprotein-RNA complex forms a left-handed helical nucleocapsid.
Method: subtomogram averaging / : Bakker SE, Duquerroy S, Galloux M, Loney C, Conner E, Eleouet JF, Rey FA, Bhella D

EMDB-2370:
The Respiratory Syncytial Virus nucleoprotein-RNA complex forms a left-handed helical nucleocapsid.
Method: subtomogram averaging / : Bakker SE, Duquerroy S, Galloux M, Loney C, Conner E, Eleouet JF, Rey FA, Bhella D

PDB-3zx8:
Cryo-EM reconstruction of native and expanded Turnip Crinkle virus
Method: single particle / : Bakker SE, Robottom J, Hogle JM, Maeda A, Pearson AR, Stockley PG, Ranson NA, Harrison SC

PDB-3zx9:
Cryo-EM reconstruction of native and expanded Turnip Crinkle virus
Method: single particle / : Bakker SE, Robottom J, Pearson AR, Stockley PG, Ranson NA

EMDB-1863:
Cryo-EM reconstruction of native and expanded Turnip Crinkle virus
Method: single particle / : Bakker SE, Robottom J, Pearson AR, Stockley PG, Ranson NA

EMDB-1864:
Cryo-EM reconstruction of native and expanded Turnip Crinkle virus
Method: single particle / : Bakker SE, Robottom J, Pearson AR, Stockley PG, Ranson NA

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

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