[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,078 items for (author: bak & j)

EMDB-70787:
Designed one-component T=3 quasisymmetric protein nanocage
Method: single particle / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70792:
Designed one-component T=3 quasisymmetric protein nanocage pentamer sub-particle region
Method: single particle / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70797:
Designed one-component T=13 quasisymmetric protein nanocage pentamer sub-particle region
Method: subtomogram averaging / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70798:
Designed one-component T=13 quasisymmetric protein nanocage hexamer sub-particle region
Method: subtomogram averaging / : Lee S, Chmielewski D, Wang S, Kibler R, Park YJ, Veesler D, Baker D

EMDB-70780:
CryoEM structure of the soluble-WRAPed membranous portion of MspA (Mycobacterium smegmatis porin), dimerized along the native interface.
Method: single particle / : Carr KD, Weidle C, Alexis C, Borst AJ

EMDB-75575:
MPNN-fixbb designed RNA molecule
Method: single particle / : Haack DB, Spellmon N, Favor AH, Kubaney A, Baker D, Rudolfs B, Hingey J, Mancino A, Yu Z, Toor N, Das R

EMDB-75584:
MPNN-RFdiff designed RNA molecule
Method: single particle / : Hingey J, Spellmon N, Favor AH, Kubaney A, Baker D, Haack DB, Rudolfs B, Mancino A, Yu Z, Toor N, Das R

PDB-10zu:
MPNN-fixbb designed RNA molecule
Method: single particle / : Haack DB, Spellmon N, Favor AH, Kubaney A, Baker D, Rudolfs B, Hingey J, Mancino A, Yu Z, Toor N, Das R

PDB-11ag:
MPNN-RFdiff designed RNA molecule
Method: single particle / : Hingey J, Spellmon N, Favor AH, Kubaney A, Baker D, Haack DB, Rudolfs B, Mancino A, Yu Z, Toor N, Das R

EMDB-70605:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

EMDB-70685:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

PDB-9om3:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Single Particle CryoEM Map with Icosahedral Symmetry Applied
Method: single particle / : DiMaio F, Weidle C

PDB-9op9:
Two Component Protein Nano-Particle (T=3). De Novo Design, Computationally Relaxed into Low Resolution Subtomogram Averaged CryoEM Map with Icosahedral Symmetry Applied
Method: subtomogram averaging / : DiMaio F, Chmielewski D, Weidle C

EMDB-53004:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

PDB-9qc6:
Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)
Method: single particle / : Shilliday F, Maia de Oliveira T, Gancedo-Rodrigo M

EMDB-71831:
Bacillus subtilis teneurin-like protein
Method: single particle / : Low YS, Landsberg MJL

PDB-9pt5:
Bacillus subtilis teneurin-like protein
Method: single particle / : Low YS, Landsberg MJL

EMDB-70128:
ZnO Nucleated Z4-C3i Trimer Within the Octahedral Z4-Cage Nanoparticle
Method: single particle / : Borst AJ

EMDB-70146:
Octahedral Z4-Cage Nanoparticle
Method: single particle / : Borst AJ

EMDB-68747:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

PDB-22xc:
Structure of CXCR4 in complex with a de-novo designed mini-protein antagonist
Method: single particle / : Banerjee R, Ganguly M, Banerjee N, Tiwari D, Muratspahic E, Baker D, Shukla AK

EMDB-56885:
NorA bound to miniprotein I-23
Method: single particle / : Lamon G, Mishra P, Chazin-Gray A, Baker D, Traaseth NJ

PDB-28vj:
NorA bound to miniprotein I-23
Method: single particle / : Lamon G, Mishra P, Chazin-Gray A, Baker D, Traaseth NJ

EMDB-72476:
His-tagged Glutamine Synthetase on a Ni-NTA lipid monolayer grid
Method: single particle / : Baker RW, Strauss JD

PDB-9y4a:
His-tagged Glutamine Synthetase on a Ni-NTA lipid monolayer grid
Method: single particle / : Baker RW, Strauss JD

EMDB-70595:
Structure of wild-type human TRPC3
Method: single particle / : Bell B, Baker ML, Cordero-Morales JF

EMDB-70596:
Structure of human TRPC3 T573A mutant
Method: single particle / : Bell B, Baker ML, Cordero-Morales JF

EMDB-70597:
Structure of human TRPC3 cerebellar splice variant (isoform c)
Method: single particle / : Bell B, Baker ML, Cordero-Morales JF

EMDB-70601:
Structure of a constitutively open human TRPC3 mutant in the inhibited state
Method: single particle / : Bell B, Baker ML, Cordero-Morales JF

EMDB-70724:
Structure of a constitutively open human TRPC3 mutant
Method: single particle / : Bell B, Baker ML, Cordero-Morales JF

PDB-9olk:
Structure of wild-type human TRPC3
Method: single particle / : Bell B, Baker ML, Cordero-Morales JF

PDB-9oll:
Structure of human TRPC3 T573A mutant
Method: single particle / : Bell B, Baker ML, Cordero-Morales JF

PDB-9olm:
Structure of human TRPC3 cerebellar splice variant (isoform c)
Method: single particle / : Bell B, Baker ML, Cordero-Morales JF

PDB-9olx:
Structure of a constitutively open human TRPC3 mutant in the inhibited state
Method: single particle / : Bell B, Baker ML, Cordero-Morales JF

PDB-9opu:
Structure of a constitutively open human TRPC3 mutant
Method: single particle / : Bell B, Baker ML, Cordero-Morales JF

EMDB-53686:
Prefusion stabilized spike glycoprotein of human coronavirus OC43.
Method: single particle / : Melchers JM, Hulswit RJG, Hurdiss DL

EMDB-53687:
Prefusion stabilized spike glycoprotein of equine coronavirus.
Method: single particle / : Melchers JM, Hulswit RJG, Hurdiss DL

PDB-9r6s:
Prefusion stabilized spike glycoprotein of human coronavirus OC43.
Method: single particle / : Melchers JM, Hulswit RJG, Hurdiss DL

PDB-9r6t:
Prefusion stabilized spike glycoprotein of equine coronavirus.
Method: single particle / : Melchers JM, Hulswit RJG, Hurdiss DL

EMDB-52847:
Structure of Teneurin-Like Protein (TLP)
Method: single particle / : Raoelijaona F, Zhou J, El-Omari K, Lowe ED, Seiradake E

PDB-9ifo:
Structure of Teneurin-Like Protein (TLP)
Method: single particle / : Raoelijaona F, Zhou J, El-Omari K, Lowe ED, Seiradake E

EMDB-47752:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-47805:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e93:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

PDB-9e9v:
Structural Insights into HIV-1 Vif-Mediated Ubiquitination and Degradation of APOBEC3H
Method: single particle / : Matsuo H, Skorupka KA

EMDB-52627:
Ice-free ESIBD structure of GroEL
Method: single particle / : Barrass SV, Esser TK, Mowry NJ, Eriksson L, Hruby J, Seeley LT, Drabbels M, Baker LA, Rauschenbach S, Lorenz UJ

EMDB-49972:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in cleavage state
Method: single particle / : Richman DE, Berger JM

EMDB-70206:
CryoEM structure of M. mazei topoisomerase VI(A-E342Q)-minicircle DNA complex in asymmetric state
Method: single particle / : Richman DE, Berger JM

EMDB-70232:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex
Method: single particle / : Richman DE, Berger JM

EMDB-70239:
CryoEM structure of M. mazei topoisomerase VI-minicircle DNA complex in partially unfolded transducer state
Method: single particle / : Richman DE, Berger JM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more